Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC105918.1-201ENST00000474399 838 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.45□□□□□ -1.86
COL4A4P53420 AC119751.4-201ENST00000507498 357 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 MIR2276-201ENST00000516886 89 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 MTND5P21-201ENST00000531961 522 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 AC011602.1-201ENST00000546484 331 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.45□□□□□ -1.86
COL4A4P53420 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.45□□□□□ -1.86
COL4A4P53420 AC023158.1-201ENST00000561632 1025 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.45□□□□□ -1.86
COL4A4P53420 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.45□□□□□ -1.86
COL4A4P53420 MIR2682-201ENST00000580305 110 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 AC067852.4-201ENST00000590314 478 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.45□□□□□ -1.86
COL4A4P53420 VN1R90P-201ENST00000595717 726 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 AL034351.1-201ENST00000605288 668 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 BX322635.1-201ENST00000605804 496 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 AC097065.2-201ENST00000608159 533 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.45□□□□□ -1.86
COL4A4P53420 AL391834.2-201ENST00000609982 546 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 AL359535.1-201ENST00000612100 1087 ntBASIC3.45□□□□□ -1.86
COL4A4P53420 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC3.45□□□□□ -1.86
COL4A4P53420 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL4A4P53420 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
COL4A4P53420 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL4A4P53420 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
COL4A4P53420 MTCO1P22-201ENST00000604619 1360 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 AL136360.1-201ENST00000503377 1900 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A4P53420 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.44□□□□□ -1.86
COL4A4P53420 AC104446.1-201ENST00000613728 1321 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 SPATA2P1-201ENST00000431223 2055 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A4P53420 RNU4-40P-201ENST00000364351 143 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 ATP5F1P6-201ENST00000402768 767 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A4P53420 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.44□□□□□ -1.86
COL4A4P53420 AC108734.1-201ENST00000439549 399 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A4P53420 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A4P53420 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.44□□□□□ -1.86
COL4A4P53420 AC107934.2-201ENST00000518653 310 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A4P53420 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.44□□□□□ -1.86
COL4A4P53420 AL136520.1-202ENST00000555494 763 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A4P53420 UBL5P2-201ENST00000583788 219 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.44□□□□□ -1.86
COL4A4P53420 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.44□□□□□ -1.86
COL4A4P53420 AC025165.5-201ENST00000602802 578 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 AC013244.3-201ENST00000605614 388 ntBASIC3.44□□□□□ -1.86
COL4A4P53420 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A4P53420 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
COL4A4P53420 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A4P53420 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.44□□□□□ -1.86
COL4A4P53420 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A4P53420 AF228730.1-201ENST00000397972 663 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AL355143.1-201ENST00000407101 841 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC126124.2-201ENST00000413542 321 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.43□□□□□ -1.86
COL4A4P53420 AL356968.1-201ENST00000416622 474 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A4P53420 ISCA1P2-201ENST00000438679 421 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AL645638.1-201ENST00000440519 361 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC3.43□□□□□ -1.86
COL4A4P53420 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.43□□□□□ -1.86
COL4A4P53420 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A4P53420 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.43□□□□□ -1.86
COL4A4P53420 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.43□□□□□ -1.86
COL4A4P53420 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.43□□□□□ -1.86
COL4A4P53420 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.43□□□□□ -1.86
COL4A4P53420 AC008507.1-201ENST00000587506 734 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC245128.3-201ENST00000594721 748 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC098483.2-201ENST00000603158 454 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 ATP1B3P1-201ENST00000605365 821 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AL157392.4-201ENST00000609756 345 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC084824.5-201ENST00000612009 413 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 uc_338.25-201ENST00000613756 156 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC231759.1-201ENST00000616455 597 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC010872.1-201ENST00000624225 675 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 AL137790.1-201ENST00000634283 177 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A4P53420 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.43□□□□□ -1.86
COL4A4P53420 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A4P53420 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A4P53420 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A4P53420 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A4P53420 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 AC073325.2-201ENST00000339545 159 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 XGY1-201ENST00000381172 446 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A4P53420 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC3.43□□□□□ -1.86
COL4A4P53420 RPL6P21-201ENST00000418672 846 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms