Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.5□□□□□ -1.85
SDC1P18827 VN1R74P-201ENST00000613259 503 ntBASIC3.5□□□□□ -1.85
SDC1P18827 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
SDC1P18827 MIR6875-201ENST00000617506 72 ntBASIC3.5□□□□□ -1.85
SDC1P18827 AL354798.1-201ENST00000622505 329 ntBASIC3.5□□□□□ -1.85
SDC1P18827 AC004808.1-201ENST00000627671 721 ntBASIC3.5□□□□□ -1.85
SDC1P18827 AL732372.2-225ENST00000642124 456 ntBASIC3.5□□□□□ -1.85
SDC1P18827 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.5□□□□□ -1.85
SDC1P18827 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
SDC1P18827 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
SDC1P18827 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
SDC1P18827 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.5□□□□□ -1.85
SDC1P18827 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.5□□□□□ -1.85
SDC1P18827 AC111188.2-201ENST00000529697 1387 ntBASIC3.5□□□□□ -1.85
SDC1P18827 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.49□□□□□ -1.85
SDC1P18827 MTND4P9-201ENST00000507819 1346 ntBASIC3.49□□□□□ -1.85
SDC1P18827 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
SDC1P18827 RNA5SP42-201ENST00000364278 115 ntBASIC3.49□□□□□ -1.85
SDC1P18827 RPL7P27-201ENST00000403775 720 ntBASIC3.49□□□□□ -1.85
SDC1P18827 PPIAP31-201ENST00000405422 495 ntBASIC3.49□□□□□ -1.85
SDC1P18827 MTHFD2P2-201ENST00000407725 247 ntBASIC3.49□□□□□ -1.85
SDC1P18827 RNU6-575P-201ENST00000411326 105 ntBASIC3.49□□□□□ -1.85
SDC1P18827 RPL30P2-201ENST00000414021 291 ntBASIC3.49□□□□□ -1.85
SDC1P18827 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.49□□□□□ -1.85
SDC1P18827 AL159169.1-201ENST00000421119 127 ntBASIC3.49□□□□□ -1.85
SDC1P18827 SFR1P2-201ENST00000421841 730 ntBASIC3.49□□□□□ -1.85
SDC1P18827 AL139247.1-201ENST00000422768 325 ntBASIC3.49□□□□□ -1.85
SDC1P18827 AC006989.1-201ENST00000427212 131 ntBASIC3.49□□□□□ -1.85
SDC1P18827 AC092634.2-201ENST00000428146 1010 ntBASIC3.49□□□□□ -1.85
SDC1P18827 RPL36P19-201ENST00000430744 301 ntBASIC3.49□□□□□ -1.85
SDC1P18827 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.49□□□□□ -1.85
SDC1P18827 AC011242.1-201ENST00000433596 1158 ntBASIC3.49□□□□□ -1.85
SDC1P18827 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.49□□□□□ -1.85
SDC1P18827 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.49□□□□□ -1.85
SDC1P18827 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.49□□□□□ -1.85
SDC1P18827 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.49□□□□□ -1.85
SDC1P18827 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.49□□□□□ -1.85
SDC1P18827 AC021146.1-201ENST00000511202 716 ntBASIC3.49□□□□□ -1.85
SDC1P18827 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.49□□□□□ -1.85
SDC1P18827 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.49□□□□□ -1.85
SDC1P18827 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.49□□□□□ -1.85
SDC1P18827 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.49□□□□□ -1.85
SDC1P18827 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SDC1P18827 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.49□□□□□ -1.85
SDC1P18827 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.49□□□□□ -1.85
SDC1P18827 AC074029.1-201ENST00000552531 1044 ntBASIC3.49□□□□□ -1.85
SDC1P18827 RN7SL703P-201ENST00000578485 302 ntBASIC3.49□□□□□ -1.85
SDC1P18827 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.49□□□□□ -1.85
SDC1P18827 RNU1-30P-201ENST00000606575 163 ntBASIC3.49□□□□□ -1.85
SDC1P18827 RNU6-1192P-201ENST00000612197 107 ntBASIC3.49□□□□□ -1.85
SDC1P18827 AC005344.1-201ENST00000613391 459 ntBASIC3.49□□□□□ -1.85
SDC1P18827 ZYXP1-201ENST00000617638 118 ntBASIC3.49□□□□□ -1.85
SDC1P18827 RNU6-489P-201ENST00000618289 107 ntBASIC3.49□□□□□ -1.85
SDC1P18827 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.48□□□□□ -1.85
SDC1P18827 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SDC1P18827 AP004289.2-201ENST00000444413 1457 ntBASIC3.48□□□□□ -1.85
SDC1P18827 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
SDC1P18827 MIR620-201ENST00000385232 95 ntBASIC3.48□□□□□ -1.85
SDC1P18827 RPL7P60-201ENST00000397636 735 ntBASIC3.48□□□□□ -1.85
SDC1P18827 MTCO2P31-201ENST00000402702 684 ntBASIC3.48□□□□□ -1.85
SDC1P18827 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC1P18827 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC1P18827 RPS12P23-201ENST00000419579 400 ntBASIC3.48□□□□□ -1.85
SDC1P18827 RPS15AP40-201ENST00000419621 391 ntBASIC3.48□□□□□ -1.85
SDC1P18827 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC1P18827 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC1P18827 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC1P18827 AC008065.1-201ENST00000428525 348 ntBASIC3.48□□□□□ -1.85
SDC1P18827 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.48□□□□□ -1.85
SDC1P18827 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.48□□□□□ -1.85
SDC1P18827 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC1P18827 MTATP6P14-201ENST00000455189 673 ntBASIC3.48□□□□□ -1.85
SDC1P18827 FCF1P6-201ENST00000456841 595 ntBASIC3.48□□□□□ -1.85
SDC1P18827 AC104982.1-201ENST00000478775 574 ntBASIC3.48□□□□□ -1.85
SDC1P18827 AL139099.1-201ENST00000497398 403 ntBASIC3.48□□□□□ -1.85
SDC1P18827 SNORA70.14-201ENST00000516205 110 ntBASIC3.48□□□□□ -1.85
SDC1P18827 SOD1P3-201ENST00000518682 454 ntBASIC3.48□□□□□ -1.85
SDC1P18827 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC1P18827 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.48□□□□□ -1.85
SDC1P18827 AC019227.1-201ENST00000526902 510 ntBASIC3.48□□□□□ -1.85
SDC1P18827 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC1P18827 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC1P18827 AC087897.1-201ENST00000550134 156 ntBASIC3.48□□□□□ -1.85
SDC1P18827 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC1P18827 AC053481.4-201ENST00000583164 216 ntBASIC3.48□□□□□ -1.85
SDC1P18827 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC1P18827 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SDC1P18827 AC093673.2-201ENST00000609674 331 ntBASIC3.48□□□□□ -1.85
SDC1P18827 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SDC1P18827 AC099669.2-201ENST00000616549 437 ntBASIC3.48□□□□□ -1.85
SDC1P18827 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
SDC1P18827 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SDC1P18827 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SDC1P18827 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC3.48□□□□□ -1.85
SDC1P18827 AC009269.6-201ENST00000621778 588 ntBASIC3.48□□□□□ -1.85
SDC1P18827 AL732618.1-201ENST00000623251 301 ntBASIC3.48□□□□□ -1.85
SDC1P18827 AC099654.8-201ENST00000637757 681 ntBASIC3.48□□□□□ -1.85
SDC1P18827 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.48□□□□□ -1.85
SDC1P18827 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.48□□□□□ -1.85
SDC1P18827 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms