Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Gm18032-201ENSMUST00000222541 538 ntBASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC18.1■□□□□ 0.49
Prpf40aQ9R1C7 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Gm22697-201ENSMUST00000175194 63 ntBASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Gm27389-201ENSMUST00000183622 195 ntBASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC18.09■□□□□ 0.49
Prpf40aQ9R1C7 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Prpf40aQ9R1C7 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Prpf40aQ9R1C7 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Prpf40aQ9R1C7 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Prpf40aQ9R1C7 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Prpf40aQ9R1C7 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Prpf40aQ9R1C7 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Prpf40aQ9R1C7 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Prpf40aQ9R1C7 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Prpf40aQ9R1C7 Gm10013-201ENSMUST00000106074 672 ntBASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Prpf40aQ9R1C7 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Gm13186-201ENSMUST00000118031 316 ntBASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Prpf40aQ9R1C7 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms