Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Gm42900-201ENSMUST00000197184 2167 ntBASIC19.42■□□□□ 0.7
Scn11aQ9R053 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Gm14494-201ENSMUST00000118786 435 ntBASIC19.42■□□□□ 0.7
Scn11aQ9R053 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC19.42■□□□□ 0.7
Scn11aQ9R053 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Scn11aQ9R053 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.41■□□□□ 0.7
Scn11aQ9R053 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scn11aQ9R053 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn11aQ9R053 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC19.4■□□□□ 0.7
Scn11aQ9R053 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Gm27397-201ENSMUST00000184997 107 ntBASIC19.4■□□□□ 0.7
Scn11aQ9R053 Gm6089-201ENSMUST00000197666 938 ntBASIC19.4■□□□□ 0.7
Scn11aQ9R053 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC19.4■□□□□ 0.7
Scn11aQ9R053 AC225888.1-201ENSMUST00000227184 728 ntBASIC19.4■□□□□ 0.7
Scn11aQ9R053 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Scn11aQ9R053 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
Scn11aQ9R053 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
Scn11aQ9R053 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC19.39■□□□□ 0.7
Scn11aQ9R053 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC19.39■□□□□ 0.7
Scn11aQ9R053 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Scn11aQ9R053 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Scn11aQ9R053 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Scn11aQ9R053 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.7
Scn11aQ9R053 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
Scn11aQ9R053 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Scn11aQ9R053 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.39■□□□□ 0.7
Scn11aQ9R053 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Scn11aQ9R053 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Gm5682-201ENSMUST00000173402 505 ntBASIC19.39■□□□□ 0.69
Scn11aQ9R053 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Scn11aQ9R053 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Scn11aQ9R053 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Scn11aQ9R053 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn11aQ9R053 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Scn11aQ9R053 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Scn11aQ9R053 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Scn11aQ9R053 Gm25911-201ENSMUST00000157621 56 ntBASIC19.38■□□□□ 0.69
Scn11aQ9R053 Gm27646-201ENSMUST00000183989 110 ntBASIC19.38■□□□□ 0.69
Scn11aQ9R053 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC19.38■□□□□ 0.69
Scn11aQ9R053 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC19.38■□□□□ 0.69
Scn11aQ9R053 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms