Protein–RNA interactions for Protein: Q9JKE1

Trem3, TREM-3, mousemouse

Predictions only

Length 183 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem3Q9JKE1 AC115863.1-201ENSMUST00000214815 1813 ntBASIC13.34□□□□□ -0.27
Trem3Q9JKE1 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Trem3Q9JKE1 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.27
Trem3Q9JKE1 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Trem3Q9JKE1 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Trem3Q9JKE1 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
Trem3Q9JKE1 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Trem3Q9JKE1 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Trem3Q9JKE1 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Trem3Q9JKE1 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 AC120002.2-201ENSMUST00000220205 773 ntBASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trem3Q9JKE1 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Gm44878-201ENSMUST00000205812 1295 ntBASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Il3ra-202ENSMUST00000223589 738 ntBASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Trem3Q9JKE1 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Gm5643-201ENSMUST00000117081 966 ntBASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Trem3Q9JKE1 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Wnt10b-204ENSMUST00000226655 1807 ntBASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Gm38027-201ENSMUST00000192315 235 ntBASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trem3Q9JKE1 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms