Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ddx56Q9D0R4 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 AC159205.3-201ENSMUST00000224614 874 ntBASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.29■□□□□ 0.36
Ddx56Q9D0R4 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ddx56Q9D0R4 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Gm37722-201ENSMUST00000193757 208 ntBASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
Ddx56Q9D0R4 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ddx56Q9D0R4 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.27■□□□□ 0.35
Ddx56Q9D0R4 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ddx56Q9D0R4 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ddx56Q9D0R4 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Ddx56Q9D0R4 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms