Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Smc1aQ9CU62 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC18.39■□□□□ 0.54
Smc1aQ9CU62 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Smc1aQ9CU62 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Gm13401-201ENSMUST00000117074 291 ntBASIC18.39■□□□□ 0.53
Smc1aQ9CU62 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Gm29791-202ENSMUST00000207888 369 ntBASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Gm21559-201ENSMUST00000220638 855 ntBASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Gm8587-201ENSMUST00000076538 843 ntBASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smc1aQ9CU62 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 AC154471.1-201ENSMUST00000224418 436 ntBASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Smc1aQ9CU62 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Gm11841-201ENSMUST00000117060 1963 ntBASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smc1aQ9CU62 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Mir1668-201ENSMUST00000184114 107 ntBASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Gm5587-201ENSMUST00000206270 674 ntBASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Gm7370-201ENSMUST00000219471 767 ntBASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smc1aQ9CU62 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms