Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim9Q8C7M3 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Trim9Q8C7M3 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Trim9Q8C7M3 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
Trim9Q8C7M3 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim9Q8C7M3 Gm15442-201ENSMUST00000117905 1527 ntBASIC18.18■□□□□ 0.5
Trim9Q8C7M3 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.18■□□□□ 0.5
Trim9Q8C7M3 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim9Q8C7M3 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Gm11355-201ENSMUST00000121120 306 ntBASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim9Q8C7M3 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Gm36967-201ENSMUST00000193814 266 ntBASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Trim9Q8C7M3 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC18.14■□□□□ 0.5
Trim9Q8C7M3 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Trim9Q8C7M3 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Gm10013-201ENSMUST00000106074 672 ntBASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim9Q8C7M3 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms