Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 Gm28541-201ENSMUST00000185206 442 ntTSL 5 BASIC17.14■□□□□ 0.33
Trim35Q8C006 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC17.14■□□□□ 0.33
Trim35Q8C006 1700113A16Rik-203ENSMUST00000200006 563 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 Gm45259-201ENSMUST00000209217 1006 ntBASIC17.14■□□□□ 0.33
Trim35Q8C006 Odf3b-204ENSMUST00000227834 930 ntBASIC17.14■□□□□ 0.33
Trim35Q8C006 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 Anxa10-202ENSMUST00000034054 1222 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
Trim35Q8C006 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.14■□□□□ 0.33
Trim35Q8C006 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 AC160966.1-202ENSMUST00000216860 1318 ntTSL 5 BASIC17.14■□□□□ 0.33
Trim35Q8C006 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim35Q8C006 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Trim35Q8C006 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim35Q8C006 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Hspb11-202ENSMUST00000106749 607 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.13■□□□□ 0.33
Trim35Q8C006 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Trim35Q8C006 Gm16042-201ENSMUST00000204813 1247 ntBASIC17.13■□□□□ 0.33
Trim35Q8C006 Gm18597-201ENSMUST00000209519 694 ntBASIC17.13■□□□□ 0.33
Trim35Q8C006 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Gm46436-201ENSMUST00000221851 1294 ntBASIC17.13■□□□□ 0.33
Trim35Q8C006 Clec4a2-201ENSMUST00000032248 1261 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.13■□□□□ 0.33
Trim35Q8C006 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim35Q8C006 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim35Q8C006 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC17.12■□□□□ 0.33
Trim35Q8C006 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim35Q8C006 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Trim35Q8C006 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trim35Q8C006 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trim35Q8C006 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trim35Q8C006 Gm43952-201ENSMUST00000203765 751 ntBASIC17.12■□□□□ 0.33
Trim35Q8C006 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim35Q8C006 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Casp4-201ENSMUST00000027012 1435 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trim35Q8C006 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim35Q8C006 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Gm7712-202ENSMUST00000222331 1510 ntBASIC17.11■□□□□ 0.33
Trim35Q8C006 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim35Q8C006 Gm26836-201ENSMUST00000181056 1568 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim35Q8C006 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim35Q8C006 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim35Q8C006 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.11■□□□□ 0.33
Trim35Q8C006 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim35Q8C006 Gm10418-201ENSMUST00000100943 576 ntBASIC17.11■□□□□ 0.33
Trim35Q8C006 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
Trim35Q8C006 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.11■□□□□ 0.33
Trim35Q8C006 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.11■□□□□ 0.33
Trim35Q8C006 Gm44270-201ENSMUST00000203084 1234 ntBASIC17.11■□□□□ 0.33
Trim35Q8C006 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim35Q8C006 AC154417.1-201ENSMUST00000223876 476 ntBASIC17.11■□□□□ 0.33
Trim35Q8C006 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Trim35Q8C006 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trim35Q8C006 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim35Q8C006 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Trim35Q8C006 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms