Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim56Q80VI1 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Gm9103-201ENSMUST00000119371 405 ntBASIC19.4■□□□□ 0.7
Trim56Q80VI1 Gm28033-201ENSMUST00000184224 96 ntBASIC19.4■□□□□ 0.7
Trim56Q80VI1 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim56Q80VI1 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim56Q80VI1 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.39■□□□□ 0.7
Trim56Q80VI1 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Trim56Q80VI1 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim56Q80VI1 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim56Q80VI1 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim56Q80VI1 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC19.38■□□□□ 0.69
Trim56Q80VI1 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC19.37■□□□□ 0.69
Trim56Q80VI1 CT009713.7-201ENSMUST00000224689 571 ntBASIC19.37■□□□□ 0.69
Trim56Q80VI1 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim56Q80VI1 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Gm18669-201ENSMUST00000216049 778 ntBASIC19.36■□□□□ 0.69
Trim56Q80VI1 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms