Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 Gm16401-202ENSMUST00000197463 2074 ntBASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chd4Q6PDQ2 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Chd4Q6PDQ2 Gm25925-201ENSMUST00000158314 306 ntBASIC21.39■■□□□ 1.02
Chd4Q6PDQ2 Gm8655-201ENSMUST00000221159 852 ntBASIC21.39■■□□□ 1.02
Chd4Q6PDQ2 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Chd4Q6PDQ2 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chd4Q6PDQ2 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chd4Q6PDQ2 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chd4Q6PDQ2 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chd4Q6PDQ2 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chd4Q6PDQ2 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chd4Q6PDQ2 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Chd4Q6PDQ2 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC21.39■■□□□ 1.01
Chd4Q6PDQ2 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chd4Q6PDQ2 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chd4Q6PDQ2 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chd4Q6PDQ2 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC21.38■■□□□ 1.01
Chd4Q6PDQ2 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Chd4Q6PDQ2 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Chd4Q6PDQ2 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC21.37■■□□□ 1.01
Chd4Q6PDQ2 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC21.37■■□□□ 1.01
Chd4Q6PDQ2 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chd4Q6PDQ2 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chd4Q6PDQ2 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chd4Q6PDQ2 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Chd4Q6PDQ2 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chd4Q6PDQ2 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC21.37■■□□□ 1.01
Chd4Q6PDQ2 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chd4Q6PDQ2 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Chd4Q6PDQ2 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Gm45606-201ENSMUST00000209836 2795 ntBASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Gm43575-201ENSMUST00000196420 516 ntBASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Chd4Q6PDQ2 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Chd4Q6PDQ2 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Chd4Q6PDQ2 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Chd4Q6PDQ2 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms