Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Gm43353-201ENSMUST00000199224 1295 ntBASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Gm23634-201ENSMUST00000175071 91 ntBASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Gm45058-201ENSMUST00000205810 766 ntBASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 AC093043.3-201ENSMUST00000226531 2273 ntBASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sh3rf1Q69ZI1 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Mir5130-201ENSMUST00000175160 84 ntBASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sh3rf1Q69ZI1 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Gm10013-201ENSMUST00000106074 672 ntBASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Gm10459-201ENSMUST00000202708 1155 ntBASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Gm4974-201ENSMUST00000209974 875 ntBASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms