Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nr1h4Q60641 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nr1h4Q60641 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nr1h4Q60641 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nr1h4Q60641 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nr1h4Q60641 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nr1h4Q60641 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Nr1h4Q60641 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC15.7■□□□□ 0.1
Nr1h4Q60641 Gm43072-201ENSMUST00000200283 1671 ntBASIC15.7■□□□□ 0.1
Nr1h4Q60641 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Gm15378-201ENSMUST00000121894 207 ntBASIC15.69■□□□□ 0.1
Nr1h4Q60641 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Il3ra-202ENSMUST00000223589 738 ntBASIC15.69■□□□□ 0.1
Nr1h4Q60641 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Nr1h4Q60641 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 AC115863.1-201ENSMUST00000214815 1813 ntBASIC15.68■□□□□ 0.1
Nr1h4Q60641 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC15.68■□□□□ 0.1
Nr1h4Q60641 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 AC164629.5-201ENSMUST00000220387 632 ntBASIC15.68■□□□□ 0.1
Nr1h4Q60641 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
Nr1h4Q60641 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Trmt13-210ENSMUST00000198454 880 ntBASIC15.67■□□□□ 0.1
Nr1h4Q60641 AC120002.2-201ENSMUST00000220205 773 ntBASIC15.67■□□□□ 0.1
Nr1h4Q60641 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Nr1h4Q60641 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC15.67■□□□□ 0.1
Nr1h4Q60641 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Nr1h4Q60641 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC15.66■□□□□ 0.1
Nr1h4Q60641 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Nr1h4Q60641 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
Nr1h4Q60641 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Nr1h4Q60641 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nr1h4Q60641 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nr1h4Q60641 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Nr1h4Q60641 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Nr1h4Q60641 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms