Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 AC159205.3-201ENSMUST00000224614 874 ntBASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps54Q5SPW0 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Gm9889-202ENSMUST00000206983 1577 ntBASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Gm18669-201ENSMUST00000216049 778 ntBASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps54Q5SPW0 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps54Q5SPW0 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.74
Vps54Q5SPW0 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Vps54Q5SPW0 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Gm36967-201ENSMUST00000193814 266 ntBASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms