Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Gm28631-201ENSMUST00000190740 334 ntBASIC19.32■□□□□ 0.68
Rnf180Q3U827 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf180Q3U827 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC19.32■□□□□ 0.68
Rnf180Q3U827 AC147366.1-201ENSMUST00000227671 852 ntBASIC19.32■□□□□ 0.68
Rnf180Q3U827 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf180Q3U827 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf180Q3U827 Nudt18-203ENSMUST00000228768 1578 ntBASIC19.32■□□□□ 0.68
Rnf180Q3U827 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf180Q3U827 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf180Q3U827 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
Rnf180Q3U827 Gm5366-201ENSMUST00000215494 1338 ntBASIC19.31■□□□□ 0.68
Rnf180Q3U827 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
Rnf180Q3U827 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC19.31■□□□□ 0.68
Rnf180Q3U827 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
Rnf180Q3U827 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf180Q3U827 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf180Q3U827 Gm11453-201ENSMUST00000117318 1007 ntBASIC19.31■□□□□ 0.68
Rnf180Q3U827 Gm11185-201ENSMUST00000117732 1007 ntBASIC19.31■□□□□ 0.68
Rnf180Q3U827 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC19.31■□□□□ 0.68
Rnf180Q3U827 Gm20553-201ENSMUST00000204205 844 ntBASIC19.31■□□□□ 0.68
Rnf180Q3U827 Gm18062-201ENSMUST00000208020 547 ntBASIC19.31■□□□□ 0.68
Rnf180Q3U827 Gm18055-201ENSMUST00000208254 547 ntBASIC19.31■□□□□ 0.68
Rnf180Q3U827 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC19.31■□□□□ 0.68
Rnf180Q3U827 AC149294.4-201ENSMUST00000227870 882 ntBASIC19.31■□□□□ 0.68
Rnf180Q3U827 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf180Q3U827 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf180Q3U827 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf180Q3U827 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf180Q3U827 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf180Q3U827 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf180Q3U827 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf180Q3U827 Notumos-201ENSMUST00000151998 2659 ntBASIC19.3■□□□□ 0.68
Rnf180Q3U827 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf180Q3U827 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Rnf180Q3U827 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Rnf180Q3U827 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf180Q3U827 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Rnf180Q3U827 AC153962.4-201ENSMUST00000217878 242 ntBASIC19.3■□□□□ 0.68
Rnf180Q3U827 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Rnf180Q3U827 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf180Q3U827 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf180Q3U827 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf180Q3U827 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf180Q3U827 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf180Q3U827 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Rnf180Q3U827 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf180Q3U827 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf180Q3U827 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf180Q3U827 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf180Q3U827 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf180Q3U827 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf180Q3U827 Mir7085-201ENSMUST00000184353 66 ntBASIC19.28■□□□□ 0.68
Rnf180Q3U827 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Rnf180Q3U827 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf180Q3U827 AC126250.1-201ENSMUST00000228343 1768 ntBASIC19.28■□□□□ 0.68
Rnf180Q3U827 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf180Q3U827 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf180Q3U827 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf180Q3U827 AC132265.1-201ENSMUST00000219233 1665 ntBASIC19.27■□□□□ 0.68
Rnf180Q3U827 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Rnf180Q3U827 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf180Q3U827 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf180Q3U827 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC19.27■□□□□ 0.68
Rnf180Q3U827 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC19.27■□□□□ 0.68
Rnf180Q3U827 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf180Q3U827 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC19.27■□□□□ 0.68
Rnf180Q3U827 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf180Q3U827 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf180Q3U827 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf180Q3U827 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Gm25287-201ENSMUST00000103846 110 ntBASIC19.26■□□□□ 0.67
Rnf180Q3U827 Gm22918-201ENSMUST00000103855 110 ntBASIC19.26■□□□□ 0.67
Rnf180Q3U827 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC19.26■□□□□ 0.67
Rnf180Q3U827 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Gm5779-201ENSMUST00000218467 910 ntBASIC19.26■□□□□ 0.67
Rnf180Q3U827 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms