Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Rnf40Q3U319 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.11■□□□□ 0.33
Rnf40Q3U319 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC17.11■□□□□ 0.33
Rnf40Q3U319 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC17.11■□□□□ 0.33
Rnf40Q3U319 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf40Q3U319 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Gm42473-201ENSMUST00000201056 2291 ntBASIC17.1■□□□□ 0.33
Rnf40Q3U319 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Gm2399-201ENSMUST00000104944 225 ntBASIC17.1■□□□□ 0.33
Rnf40Q3U319 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rnf40Q3U319 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Gm29241-201ENSMUST00000189260 1096 ntBASIC17.09■□□□□ 0.33
Rnf40Q3U319 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC17.09■□□□□ 0.33
Rnf40Q3U319 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf40Q3U319 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf40Q3U319 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf40Q3U319 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf40Q3U319 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC17.08■□□□□ 0.33
Rnf40Q3U319 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf40Q3U319 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf40Q3U319 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rnf40Q3U319 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC17.08■□□□□ 0.32
Rnf40Q3U319 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rnf40Q3U319 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC17.08■□□□□ 0.32
Rnf40Q3U319 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms