Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Nkx3-1P97436 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC14.19□□□□□ -0.14
Nkx3-1P97436 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nkx3-1P97436 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Gm6376-201ENSMUST00000209407 580 ntBASIC14.18□□□□□ -0.14
Nkx3-1P97436 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 AC161829.1-201ENSMUST00000220298 281 ntBASIC14.18□□□□□ -0.14
Nkx3-1P97436 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Nkx3-1P97436 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Gm16499-203ENSMUST00000204633 2177 ntBASIC14.17□□□□□ -0.14
Nkx3-1P97436 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Gm9449-201ENSMUST00000207265 1011 ntBASIC14.17□□□□□ -0.14
Nkx3-1P97436 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Gm6296-201ENSMUST00000222599 943 ntBASIC14.17□□□□□ -0.14
Nkx3-1P97436 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nkx3-1P97436 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms