Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Rfx1P48377 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 Gm45212-201ENSMUST00000205831 3403 ntBASIC19.72■□□□□ 0.75
Rfx1P48377 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Rfx1P48377 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Rfx1P48377 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC19.71■□□□□ 0.75
Rfx1P48377 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rfx1P48377 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC19.71■□□□□ 0.75
Rfx1P48377 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Rfx1P48377 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Rfx1P48377 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
Rfx1P48377 Gm43072-201ENSMUST00000200283 1671 ntBASIC19.7■□□□□ 0.74
Rfx1P48377 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
Rfx1P48377 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rfx1P48377 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Rfx1P48377 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Rfx1P48377 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 Gm12085-201ENSMUST00000119263 940 ntBASIC19.69■□□□□ 0.74
Rfx1P48377 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC19.69■□□□□ 0.74
Rfx1P48377 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rfx1P48377 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rfx1P48377 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Rfx1P48377 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rfx1P48377 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rfx1P48377 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Rfx1P48377 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rfx1P48377 AC115863.1-201ENSMUST00000214815 1813 ntBASIC19.68■□□□□ 0.74
Rfx1P48377 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Rfx1P48377 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Rfx1P48377 Gm18666-201ENSMUST00000190039 958 ntBASIC19.68■□□□□ 0.74
Rfx1P48377 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC19.68■□□□□ 0.74
Rfx1P48377 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rfx1P48377 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rfx1P48377 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rfx1P48377 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC19.68■□□□□ 0.74
Rfx1P48377 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rfx1P48377 Prob1-201ENSMUST00000097619 3021 ntBASIC19.68■□□□□ 0.74
Rfx1P48377 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.67■□□□□ 0.74
Rfx1P48377 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Rfx1P48377 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19.67■□□□□ 0.74
Rfx1P48377 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms