Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Chd3B1AR17 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC16.07■□□□□ 0.16
Chd3B1AR17 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Gm16401-202ENSMUST00000197463 2074 ntBASIC16.07■□□□□ 0.16
Chd3B1AR17 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC16.06■□□□□ 0.16
Chd3B1AR17 Gm25745-201ENSMUST00000174945 133 ntBASIC16.06■□□□□ 0.16
Chd3B1AR17 Gm8349-201ENSMUST00000182720 1003 ntBASIC16.06■□□□□ 0.16
Chd3B1AR17 Mir8098-201ENSMUST00000184011 137 ntBASIC16.06■□□□□ 0.16
Chd3B1AR17 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC16.06■□□□□ 0.16
Chd3B1AR17 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.06■□□□□ 0.16
Chd3B1AR17 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
Chd3B1AR17 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Gm7507-201ENSMUST00000183053 1008 ntBASIC16.06■□□□□ 0.16
Chd3B1AR17 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC16.06■□□□□ 0.16
Chd3B1AR17 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC16.06■□□□□ 0.16
Chd3B1AR17 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd3B1AR17 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Chd3B1AR17 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Chd3B1AR17 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Chd3B1AR17 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Chd3B1AR17 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
Chd3B1AR17 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Chd3B1AR17 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Chd3B1AR17 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
Chd3B1AR17 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Chd3B1AR17 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Chd3B1AR17 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Chd3B1AR17 Gm32996-201ENSMUST00000199828 1447 ntBASIC16.05■□□□□ 0.16
Chd3B1AR17 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Chd3B1AR17 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Chd3B1AR17 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Chd3B1AR17 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Chd3B1AR17 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Chd3B1AR17 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC16.04■□□□□ 0.16
Chd3B1AR17 Gm18733-201ENSMUST00000173950 856 ntBASIC16.04■□□□□ 0.16
Chd3B1AR17 Gm5864-201ENSMUST00000202263 970 ntBASIC16.04■□□□□ 0.16
Chd3B1AR17 Rps4l-201ENSMUST00000071745 943 ntBASIC16.04■□□□□ 0.16
Chd3B1AR17 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC16.04■□□□□ 0.16
Chd3B1AR17 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC16.04■□□□□ 0.16
Chd3B1AR17 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
Chd3B1AR17 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd3B1AR17 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 11.2 ms