Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Gm45212-201ENSMUST00000205831 3403 ntBASIC11.27□□□□□ -0.61
Trav4-3A0A0B4J1K1 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav4-3A0A0B4J1K1 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav4-3A0A0B4J1K1 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav4-3A0A0B4J1K1 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav4-3A0A0B4J1K1 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav4-3A0A0B4J1K1 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav4-3A0A0B4J1K1 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC11.27□□□□□ -0.61
Trav4-3A0A0B4J1K1 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav4-3A0A0B4J1K1 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav4-3A0A0B4J1K1 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Ccdc166-201ENSMUST00000182172 2584 ntBASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Gm13509-201ENSMUST00000119733 1308 ntBASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav4-3A0A0B4J1K1 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Gm13241-201ENSMUST00000094493 780 ntBASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Gm42473-201ENSMUST00000201056 2291 ntBASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trav4-3A0A0B4J1K1 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 CT010444.2-201ENSMUST00000217877 1629 ntBASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Gm12821-201ENSMUST00000120022 600 ntBASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC11.24□□□□□ -0.61
Trav4-3A0A0B4J1K1 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC11.24□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms