Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
MSX2P35548 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSX2P35548 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.9□□□□□ -1.63
MSX2P35548 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSX2P35548 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC4.9□□□□□ -1.63
MSX2P35548 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
MSX2P35548 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSX2P35548 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX2P35548 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.89□□□□□ -1.63
MSX2P35548 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSX2P35548 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSX2P35548 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
MSX2P35548 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
MSX2P35548 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
MSX2P35548 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
MSX2P35548 MIR375-201ENST00000362103 64 ntBASIC4.89□□□□□ -1.63
MSX2P35548 RNU6-115P-201ENST00000364310 107 ntBASIC4.89□□□□□ -1.63
MSX2P35548 Y_RNA.279-201ENST00000364763 95 ntBASIC4.89□□□□□ -1.63
MSX2P35548 Y_RNA.409-201ENST00000383990 98 ntBASIC4.89□□□□□ -1.63
MSX2P35548 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX2P35548 HMGN1P20-201ENST00000411849 300 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX2P35548 HMGB3P20-201ENST00000417997 600 ntBASIC4.89□□□□□ -1.63
MSX2P35548 USP9YP36-201ENST00000424581 829 ntBASIC4.89□□□□□ -1.63
MSX2P35548 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX2P35548 AL139148.1-201ENST00000427122 680 ntBASIC4.89□□□□□ -1.63
MSX2P35548 RPS26P47-201ENST00000427219 348 ntBASIC4.89□□□□□ -1.63
MSX2P35548 NPM1P34-201ENST00000428821 893 ntBASIC4.89□□□□□ -1.63
MSX2P35548 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX2P35548 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.89□□□□□ -1.63
MSX2P35548 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX2P35548 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSX2P35548 MTCO1P27-201ENST00000448269 226 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.89□□□□□ -1.63
MSX2P35548 MEMO1P3-201ENST00000459811 302 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AC097493.1-201ENST00000463958 372 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AL591473.1-201ENST00000464297 313 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.89□□□□□ -1.63
MSX2P35548 AC022447.3-201ENST00000506865 495 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AC025674.1-201ENST00000507074 324 ntBASIC4.89□□□□□ -1.63
MSX2P35548 POU5F1P7-201ENST00000508759 541 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX2P35548 AC006427.1-201ENST00000514359 712 ntBASIC4.89□□□□□ -1.63
MSX2P35548 RNU6-1153P-201ENST00000516760 105 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AF235103.2-201ENST00000525753 346 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.89□□□□□ -1.63
MSX2P35548 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX2P35548 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.89□□□□□ -1.63
MSX2P35548 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX2P35548 MIR544B-201ENST00000582372 78 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC4.89□□□□□ -1.63
MSX2P35548 AC115085.1-201ENST00000588924 229 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX2P35548 AC073091.2-201ENST00000603205 907 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AC103792.1-201ENST00000603591 919 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AL133338.2-201ENST00000604292 736 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AL035413.2-201ENST00000604801 525 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AP001521.1-201ENST00000609150 300 ntBASIC4.89□□□□□ -1.63
MSX2P35548 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX2P35548 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.89□□□□□ -1.63
MSX2P35548 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX2P35548 AC112204.3-201ENST00000623822 332 ntBASIC4.89□□□□□ -1.63
MSX2P35548 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX2P35548 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX2P35548 MIR4302-201ENST00000638058 60 ntBASIC4.89□□□□□ -1.63
MSX2P35548 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSX2P35548 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSX2P35548 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
MSX2P35548 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSX2P35548 AC138915.3-201ENST00000562908 1389 ntBASIC4.89□□□□□ -1.63
MSX2P35548 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX2P35548 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSX2P35548 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSX2P35548 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSX2P35548 SCARNA15-201ENST00000607520 4325 ntBASIC4.88□□□□□ -1.63
MSX2P35548 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSX2P35548 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSX2P35548 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
MSX2P35548 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSX2P35548 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
MSX2P35548 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSX2P35548 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSX2P35548 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSX2P35548 U8.3-201ENST00000363321 132 ntBASIC4.88□□□□□ -1.63
MSX2P35548 RNU4-2-201ENST00000365668 141 ntBASIC4.88□□□□□ -1.63
MSX2P35548 RNU6-483P-201ENST00000384088 108 ntBASIC4.88□□□□□ -1.63
MSX2P35548 RNU6-1151P-201ENST00000384684 107 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AL359643.1-201ENST00000404109 423 ntBASIC4.88□□□□□ -1.63
MSX2P35548 RNU6-272P-201ENST00000411028 104 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AC073264.1-201ENST00000411508 416 ntBASIC4.88□□□□□ -1.63
MSX2P35548 EEF1A1P40-201ENST00000412883 573 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AMD1P2-201ENST00000412936 992 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.88□□□□□ -1.63
MSX2P35548 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.88□□□□□ -1.63
MSX2P35548 RPS3P2-201ENST00000421346 701 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AC009965.2-201ENST00000425328 970 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms