Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC113347.3-201ENST00000509113 148 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC027309.2-201ENST00000520566 192 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 OR4R3P-201ENST00000525084 838 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 OR10V3P-201ENST00000525712 725 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 CYP4A43P-201ENST00000568156 121 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 VN1R83P-201ENST00000595685 445 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 AL590392.1-201ENST00000604960 446 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC092954.1-201ENST00000609121 445 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AL138478.1-201ENST00000612252 832 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC006213.4-201ENST00000616184 634 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AL138721.1-201ENST00000616756 179 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 MIR3653-201ENST00000625572 110 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 OR52H1-202ENST00000641796 1061 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS28Q9UK41 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS28Q9UK41 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS28Q9UK41 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS28Q9UK41 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS28Q9UK41 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS28Q9UK41 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS28Q9UK41 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 MIR383-201ENST00000362257 73 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 SNORD74.4-201ENST00000364129 80 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 RNU6-374P-201ENST00000364146 108 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 MIR1911-201ENST00000410783 80 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 RPL23AP38-201ENST00000423801 469 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 SDCBPP2-201ENST00000424643 885 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 RPL31P54-201ENST00000429803 370 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 USP9YP7-201ENST00000436723 430 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 MTCO1P48-201ENST00000448024 1096 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 USP9YP32-201ENST00000452432 430 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC010307.1-201ENST00000467206 836 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC105137.1-201ENST00000484355 562 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC091167.1-201ENST00000492017 396 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC108475.1-201ENST00000507880 950 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 TPT1P8-201ENST00000510120 555 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 SNORA31.9-201ENST00000516429 84 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 IFITM8P-201ENST00000522529 394 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 OR5M7P-201ENST00000526140 972 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 RPL23AP97-201ENST00000568955 471 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC113368.1-201ENST00000603736 382 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC004943.3-201ENST00000624116 600 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC106754.1-201ENST00000562632 1513 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
VPS28Q9UK41 AC090337.1-201ENST00000579651 2074 ntBASIC4.41□□□□□ -1.7
VPS28Q9UK41 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.4□□□□□ -1.7
VPS28Q9UK41 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.4□□□□□ -1.7
VPS28Q9UK41 AC130650.2-201ENST00000618736 2403 ntBASIC4.4□□□□□ -1.7
VPS28Q9UK41 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS28Q9UK41 RNU1-15P-201ENST00000353977 144 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 Y_RNA.472-201ENST00000384322 102 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 SNORA40.2-201ENST00000390847 128 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS28Q9UK41 RNA5SP239-201ENST00000410218 129 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC004552.1-201ENST00000419089 348 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 KRR1P1-201ENST00000419430 803 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 OFD1P18Y-201ENST00000420889 959 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 AL157831.1-201ENST00000426134 473 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC073335.1-201ENST00000427776 363 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms