Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ERHP2-201ENST00000402323 299 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 RPL23AP47-201ENST00000408017 460 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 MTCO2P21-201ENST00000419780 677 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC007435.1-201ENST00000421086 415 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC004074.1-201ENST00000421810 1063 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 Z74021.1-201ENST00000423610 407 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC091390.3-201ENST00000426478 338 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 RPL23AP1-201ENST00000428990 471 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 MTCO1P54-201ENST00000430139 712 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC084290.1-201ENST00000434995 374 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 USP9YP7-201ENST00000436723 430 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 MTND1P31-201ENST00000449206 961 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 CEACAMP6-201ENST00000452007 574 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 USP9YP32-201ENST00000452432 430 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 NF1P3-201ENST00000457709 450 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC011979.1-201ENST00000472300 483 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC108734.3-201ENST00000481241 1165 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC006499.6-201ENST00000511169 607 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 OR5M2P-201ENST00000529003 936 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC090888.2-201ENST00000559765 1144 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 GTF2IP8-201ENST00000560687 584 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC015912.2-201ENST00000571053 181 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 MIR4666A-201ENST00000580160 79 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 IGKV1OR2-9-201ENST00000603957 287 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 IGKV1OR2-11-201ENST00000604120 287 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AP003392.5-201ENST00000607857 415 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC078899.5-201ENST00000612475 178 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AP002791.1-201ENST00000623291 381 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AC004777.1-201ENST00000624317 287 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
PDLIM3Q53GG5 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
PDLIM3Q53GG5 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC3.84□□□□□ -1.8
PDLIM3Q53GG5 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 RNU6-1293P-201ENST00000384077 107 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 SNORA70C-201ENST00000384538 135 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 MIR217-201ENST00000384817 110 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 MIR3074-201ENST00000384885 81 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 MIR129-1-201ENST00000384972 72 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 RNU6-1300P-201ENST00000391046 108 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 DSTNP4-201ENST00000399472 474 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 TMSB4XP8-201ENST00000402089 135 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AL121834.1-202ENST00000404494 277 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 HDGFP1-201ENST00000405943 252 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 TMSB4XP6-201ENST00000415187 135 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 RPL22P18-201ENST00000417197 377 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AF186996.5-201ENST00000418098 904 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 MRPS36P1-201ENST00000421291 307 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 TMSB4XP1-201ENST00000424567 135 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 RPP40P1-201ENST00000426762 456 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AL137845.2-201ENST00000444292 988 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 HMGB3P30-201ENST00000457863 606 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 RPL37P6-202ENST00000464216 403 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 RPL12P20-201ENST00000475538 479 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 RN7SL319P-201ENST00000480656 221 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 VPS26AP1-201ENST00000483197 979 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC108022.1-201ENST00000493466 478 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 STMN1P2-201ENST00000508435 439 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 KRT19P6-201ENST00000510983 209 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC093755.1-201ENST00000512950 1023 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms