Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNU6-931P-201ENST00000363850 107 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.95□□□□□ -1.78
LMX1BO60663 RNU1-63P-201ENST00000383902 164 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 MIR320B1-201ENST00000390209 79 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 RNA5SP397-201ENST00000391323 118 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 AL355379.1-201ENST00000405542 640 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 RNA5SP498-201ENST00000411342 120 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 NRBF2P2-201ENST00000413087 861 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 ATG4AP1-201ENST00000416893 538 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC3.95□□□□□ -1.78
LMX1BO60663 UQCRBP1-201ENST00000421129 336 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AL009174.1-201ENST00000426577 416 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AL732292.1-201ENST00000426692 226 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.95□□□□□ -1.78
LMX1BO60663 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.95□□□□□ -1.78
LMX1BO60663 MTCYBP34-201ENST00000439552 670 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AL591503.2-201ENST00000442314 1005 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.95□□□□□ -1.78
LMX1BO60663 AP000936.2-201ENST00000447151 681 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 HMGB1P16-201ENST00000447155 540 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AC239367.2-201ENST00000447309 705 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC3.95□□□□□ -1.78
LMX1BO60663 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.95□□□□□ -1.78
LMX1BO60663 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.95□□□□□ -1.78
LMX1BO60663 AC104763.1-201ENST00000475274 360 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 RPL7P18-201ENST00000478965 734 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 GAPDHP36-201ENST00000480688 918 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 WBP1LP4-201ENST00000505043 344 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.95□□□□□ -1.78
LMX1BO60663 AC104108.1-201ENST00000509930 412 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AF213884.2-201ENST00000510417 903 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 RN7SKP21-201ENST00000516503 220 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC3.95□□□□□ -1.78
LMX1BO60663 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.95□□□□□ -1.78
LMX1BO60663 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.95□□□□□ -1.78
LMX1BO60663 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC3.95□□□□□ -1.78
LMX1BO60663 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC3.95□□□□□ -1.78
LMX1BO60663 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.95□□□□□ -1.78
LMX1BO60663 RPL7P50-201ENST00000600588 727 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 DUXAP11-201ENST00000603858 526 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AL021997.1-201ENST00000605757 193 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AC245297.2-201ENST00000610119 565 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 MIR6716-201ENST00000613413 80 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AL158063.1-201ENST00000615349 536 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.95□□□□□ -1.78
LMX1BO60663 OR52H1-202ENST00000641796 1061 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 AC000123.3-201ENST00000624029 4975 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.95□□□□□ -1.78
LMX1BO60663 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LMX1BO60663 DCAF13P3-201ENST00000561147 1334 ntBASIC3.95□□□□□ -1.78
LMX1BO60663 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.94□□□□□ -1.78
LMX1BO60663 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 ZNF833P-201ENST00000424938 1494 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 AC100871.1-201ENST00000507871 1456 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC3.94□□□□□ -1.78
LMX1BO60663 OR56B2P-202ENST00000641377 2453 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
LMX1BO60663 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 RNU6-1339P-201ENST00000363574 91 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
LMX1BO60663 RNU6-729P-201ENST00000384399 107 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 Y_RNA.560-201ENST00000384689 102 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.94□□□□□ -1.78
LMX1BO60663 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 CEACAMP8-201ENST00000413902 580 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.94□□□□□ -1.78
LMX1BO60663 GTF2IP23-201ENST00000423746 351 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 MTCO1P54-201ENST00000430139 712 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 COX6CP18-201ENST00000448769 222 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC3.94□□□□□ -1.78
LMX1BO60663 RFC5P1-201ENST00000454419 874 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms