Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AL356274.2-201ENST00000624379 3752 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 AC010329.2-201ENST00000595195 2737 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CHD3Q12873 RNU6-1320P-201ENST00000390838 107 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 RNU6-328P-201ENST00000390887 106 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 RNU6-1269P-201ENST00000391139 107 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 SNORA48.5-201ENST00000391143 135 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.07□□□□□ -1.92
CHD3Q12873 AL034379.1-201ENST00000423216 253 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 AC073063.1-201ENST00000434352 607 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 HMGB3P10-201ENST00000434734 572 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 EIF4A1P11-201ENST00000451239 222 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.07□□□□□ -1.92
CHD3Q12873 SNRPGP5-201ENST00000456003 220 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 HMGN2P7-201ENST00000456186 273 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 RNU6-599P-201ENST00000459383 107 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 RNU6-1193P-201ENST00000459461 107 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 Vault.1-201ENST00000516474 102 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 NDUFB9P3-201ENST00000521269 501 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
CHD3Q12873 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.07□□□□□ -1.92
CHD3Q12873 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.07□□□□□ -1.92
CHD3Q12873 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.07□□□□□ -1.92
CHD3Q12873 AC006504.3-201ENST00000586818 523 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 SNORD39.4-201ENST00000620099 78 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 RNU6-368P-201ENST00000620928 107 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 RNU6-538P-201ENST00000622329 107 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 AC007656.2-201ENST00000624902 4547 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CHD3Q12873 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
CHD3Q12873 AL031121.1-201ENST00000406553 254 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.07□□□□□ -1.92
CHD3Q12873 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.07□□□□□ -1.92
CHD3Q12873 AL158071.1-201ENST00000430315 461 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 BTG3P1-201ENST00000435859 716 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 RPL5P23-201ENST00000496040 868 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.07□□□□□ -1.92
CHD3Q12873 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 HIGD1AP10-201ENST00000527837 282 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.07□□□□□ -1.92
CHD3Q12873 AL121576.1-201ENST00000556055 276 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 AC125494.3-201ENST00000602759 455 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 AC023813.4-201ENST00000607580 580 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 AC006386.2-201ENST00000624491 75 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 AC012005.1-201ENST00000624575 75 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
CHD3Q12873 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CHD3Q12873 NACA3P-201ENST00000359690 648 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.06□□□□□ -1.92
CHD3Q12873 HMGN2P8-201ENST00000391458 268 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 EI24P2-201ENST00000397776 1076 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.06□□□□□ -1.92
CHD3Q12873 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CHD3Q12873 HSFY4P-201ENST00000415994 1181 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.06□□□□□ -1.92
CHD3Q12873 AJ239321.1-201ENST00000424255 564 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.06□□□□□ -1.92
CHD3Q12873 MTND6P5-201ENST00000448266 512 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 AC010655.1-201ENST00000449336 292 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 AC010468.1-201ENST00000461022 817 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 AP000893.1-201ENST00000474462 794 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 RPS27AP1-201ENST00000475545 471 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 NPM1P17-201ENST00000479221 602 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 PRELID3BP6-201ENST00000503839 571 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.06□□□□□ -1.92
CHD3Q12873 NDUFB4P9-201ENST00000511646 388 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.06□□□□□ -1.92
CHD3Q12873 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.06□□□□□ -1.92
CHD3Q12873 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.06□□□□□ -1.92
CHD3Q12873 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
CHD3Q12873 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CHD3Q12873 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
CHD3Q12873 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
CHD3Q12873 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CHD3Q12873 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CHD3Q12873 SAGE2P-201ENST00000420011 2126 ntBASIC3.06□□□□□ -1.92
CHD3Q12873 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
CHD3Q12873 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.05□□□□□ -1.92
CHD3Q12873 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CHD3Q12873 RNA5SP432-201ENST00000362480 116 ntBASIC3.05□□□□□ -1.92
CHD3Q12873 RNA5SP424-201ENST00000390988 115 ntBASIC3.05□□□□□ -1.92
CHD3Q12873 RPL7P53-201ENST00000421245 739 ntBASIC3.05□□□□□ -1.92
CHD3Q12873 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.05□□□□□ -1.92
CHD3Q12873 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.05□□□□□ -1.92
CHD3Q12873 AC109925.1-201ENST00000478069 331 ntBASIC3.05□□□□□ -1.92
CHD3Q12873 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.05□□□□□ -1.92
CHD3Q12873 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.05□□□□□ -1.92
CHD3Q12873 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms