Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC105402.2-201ENST00000438503 358 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 RPS23P7-201ENST00000466210 444 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 BZW1P2-201ENST00000473537 826 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 AC010683.1-201ENST00000473673 378 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC5.38□□□□□ -1.55
NUP88Q99567 RNU6-232P-201ENST00000517144 64 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.38□□□□□ -1.55
NUP88Q99567 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.38□□□□□ -1.55
NUP88Q99567 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC5.38□□□□□ -1.55
NUP88Q99567 AC125611.1-201ENST00000549563 229 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC5.38□□□□□ -1.55
NUP88Q99567 AL512347.1-201ENST00000566420 503 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 AC109446.2-201ENST00000567872 497 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC5.38□□□□□ -1.55
NUP88Q99567 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.38□□□□□ -1.55
NUP88Q99567 AC006272.2-201ENST00000594725 163 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 AC009318.3-201ENST00000616916 503 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 LINC01355-201ENST00000566551 5444 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.38□□□□□ -1.55
NUP88Q99567 AP000526.1-201ENST00000603308 1388 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP88Q99567 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NUP88Q99567 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP88Q99567 AC104260.2-201ENST00000623551 3497 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
NUP88Q99567 OR56B2P-202ENST00000641377 2453 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.37□□□□□ -1.55
NUP88Q99567 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.37□□□□□ -1.55
NUP88Q99567 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NUP88Q99567 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
NUP88Q99567 AL592291.1-201ENST00000403830 352 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 RNA5SP296-201ENST00000410523 111 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP88Q99567 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC5.37□□□□□ -1.55
NUP88Q99567 IPMKP1-201ENST00000425988 855 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AC092017.2-201ENST00000427600 362 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP88Q99567 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP88Q99567 AC005345.1-201ENST00000431868 217 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 NMNAT1P2-201ENST00000435192 860 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP88Q99567 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP88Q99567 SCARNA10-201ENST00000459255 330 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AC083829.1-201ENST00000503756 657 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 RFPL4AP5-201ENST00000514977 504 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 HNRNPKP5-201ENST00000515300 253 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 IGLVIV-65-201ENST00000517313 360 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AC027309.2-201ENST00000520566 192 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP88Q99567 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP88Q99567 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP88Q99567 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC5.37□□□□□ -1.55
NUP88Q99567 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP88Q99567 TRAV15-201ENST00000556680 249 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP88Q99567 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP88Q99567 MIR4999-201ENST00000585029 91 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 RNF138P2-201ENST00000603490 592 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AC115286.1-201ENST00000604298 434 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AL133243.1-201ENST00000614487 366 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 MLECP1-201ENST00000615893 709 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AL136981.2-201ENST00000617319 734 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AC007671.2-201ENST00000637344 619 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AP003399.1-201ENST00000637534 361 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AL513185.3-201ENST00000433335 1300 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP88Q99567 CYP1D1P-201ENST00000416662 1433 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NUP88Q99567 AC107027.3-201ENST00000565095 3473 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
NUP88Q99567 AL445487.1-201ENST00000415694 1580 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 AL359922.3-201ENST00000624779 1670 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 PCAT14-202ENST00000627127 3935 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP88Q99567 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
NUP88Q99567 AL031119.1-201ENST00000404707 1879 ntBASIC5.37□□□□□ -1.55
NUP88Q99567 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
NUP88Q99567 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
NUP88Q99567 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NUP88Q99567 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.36□□□□□ -1.55
NUP88Q99567 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NUP88Q99567 ZFRP1-201ENST00000457579 2970 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 AL445437.1-201ENST00000623157 3087 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
NUP88Q99567 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
NUP88Q99567 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NUP88Q99567 RNU6-1200P-201ENST00000384162 107 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 RNU5A-2P-201ENST00000384337 116 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 RNU6-1122P-201ENST00000384449 107 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 MIR1302-8-201ENST00000408342 128 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 RNU2-28P-201ENST00000410457 189 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 AC009237.2-201ENST00000421358 284 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC5.36□□□□□ -1.55
NUP88Q99567 RPL12P34-201ENST00000424532 479 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 RPL36P19-201ENST00000430744 301 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 UBE2V1P1-201ENST00000430836 445 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 TRIM60P3Y-201ENST00000432201 673 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 AC023347.2-201ENST00000433994 462 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 RPL12P46-201ENST00000436610 195 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms