Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC004024.1-201ENST00000549244 247 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA1P55317 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA1P55317 AL592494.3-201ENST00000609485 464 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 AC117490.2-201ENST00000610042 594 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
FOXA1P55317 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.26□□□□□ -1.89
FOXA1P55317 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA1P55317 AL365440.1-201ENST00000436135 2167 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 AC066616.2-201ENST00000559334 1481 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA1P55317 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA1P55317 DDX6P1-205ENST00000441966 1436 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
FOXA1P55317 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
FOXA1P55317 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
FOXA1P55317 AL356274.2-201ENST00000624379 3752 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.25□□□□□ -1.89
FOXA1P55317 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
FOXA1P55317 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXA1P55317 OR10AB1P-202ENST00000641219 1686 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 RNU4-35P-201ENST00000362588 141 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 RNU1-70P-201ENST00000362618 164 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 MIR23B-201ENST00000384832 97 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 SKINT1L-201ENST00000401057 817 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 RAB9AP3-201ENST00000412737 573 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 AL355994.1-201ENST00000424379 260 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXA1P55317 RPL21P110-201ENST00000433345 446 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 ISCA1P2-201ENST00000438679 421 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 TXNP1-201ENST00000441872 371 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXA1P55317 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXA1P55317 RAB9AP1-201ENST00000449393 573 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 AC243772.1-201ENST00000451620 410 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXA1P55317 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXA1P55317 AC022336.1-201ENST00000475510 337 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 RPL21P129-201ENST00000491732 478 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 NIPA2P2-201ENST00000496376 1083 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.25□□□□□ -1.89
FOXA1P55317 AC108078.3-201ENST00000502633 489 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 AC112198.1-201ENST00000505369 1220 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 IGKV2-26-201ENST00000518305 343 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXA1P55317 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.25□□□□□ -1.89
FOXA1P55317 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXA1P55317 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXA1P55317 OR4R3P-201ENST00000525084 838 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 OR4C2P-201ENST00000530855 1064 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.25□□□□□ -1.89
FOXA1P55317 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXA1P55317 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXA1P55317 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.25□□□□□ -1.89
FOXA1P55317 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXA1P55317 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXA1P55317 FAM60CP-201ENST00000591086 664 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 AC009303.3-201ENST00000591103 736 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXA1P55317 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXA1P55317 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
FOXA1P55317 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXA1P55317 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
FOXA1P55317 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXA1P55317 AC017071.1-201ENST00000564407 2204 ntBASIC3.25□□□□□ -1.89
FOXA1P55317 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
FOXA1P55317 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
FOXA1P55317 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA1P55317 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
FOXA1P55317 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.24□□□□□ -1.89
FOXA1P55317 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA1P55317 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
FOXA1P55317 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA1P55317 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA1P55317 EXOC5P1-201ENST00000510543 1969 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA1P55317 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA1P55317 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
FOXA1P55317 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.24□□□□□ -1.89
FOXA1P55317 SNORA5A-201ENST00000384111 134 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 GLS-203ENST00000409215 632 ntTSL 4 BASIC3.24□□□□□ -1.89
FOXA1P55317 RN7SKP177-201ENST00000410567 355 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 RN7SKP159-201ENST00000410657 292 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXA1P55317 BX890604.2-201ENST00000427883 474 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 AC022022.1-201ENST00000430304 178 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXA1P55317 AL035458.1-201ENST00000433096 585 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 RAB28P3-201ENST00000448325 597 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 RBMY2UP-201ENST00000453474 324 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 SNORA84-201ENST00000459229 133 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 OR5H3P-201ENST00000502817 919 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXA1P55317 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.24□□□□□ -1.89
FOXA1P55317 SAP18P1-201ENST00000512058 390 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 RNU1-143P-201ENST00000516296 146 ntBASIC3.24□□□□□ -1.89
FOXA1P55317 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.24□□□□□ -1.89
FOXA1P55317 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
FOXA1P55317 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms