Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Gm9103-201ENSMUST00000119371 405 ntBASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Gm27000-201ENSMUST00000182943 842 ntBASIC15.32■□□□□ 0.04
Cdc40Q9DC48 AC107711.5-202ENSMUST00000226429 702 ntBASIC15.32■□□□□ 0.04
Cdc40Q9DC48 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdc40Q9DC48 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Gm11355-201ENSMUST00000121120 306 ntBASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Ank2-226ENSMUST00000189368 339 ntBASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdc40Q9DC48 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Gm26039-201ENSMUST00000158152 144 ntBASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Gm27704-201ENSMUST00000185094 107 ntBASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdc40Q9DC48 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms