Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Syne4Q8CII8 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Syne4Q8CII8 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Syne4Q8CII8 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.66■□□□□ 0.58
Syne4Q8CII8 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Syne4Q8CII8 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Syne4Q8CII8 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Syne4Q8CII8 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Syne4Q8CII8 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Syne4Q8CII8 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Syne4Q8CII8 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Gm45683-201ENSMUST00000210825 1247 ntBASIC18.65■□□□□ 0.58
Syne4Q8CII8 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Syne4Q8CII8 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Syne4Q8CII8 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Syne4Q8CII8 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Syne4Q8CII8 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Syne4Q8CII8 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.64■□□□□ 0.58
Syne4Q8CII8 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Syne4Q8CII8 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Syne4Q8CII8 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Syne4Q8CII8 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.64■□□□□ 0.57
Syne4Q8CII8 Slc35b2-202ENSMUST00000223987 1766 ntBASIC18.64■□□□□ 0.57
Syne4Q8CII8 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Syne4Q8CII8 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Syne4Q8CII8 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC18.64■□□□□ 0.57
Syne4Q8CII8 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Syne4Q8CII8 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Syne4Q8CII8 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Syne4Q8CII8 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Syne4Q8CII8 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Syne4Q8CII8 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Syne4Q8CII8 AC122901.1-201ENSMUST00000214203 1790 ntBASIC18.63■□□□□ 0.57
Syne4Q8CII8 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.63■□□□□ 0.57
Syne4Q8CII8 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Gm7222-201ENSMUST00000117512 906 ntBASIC18.62■□□□□ 0.57
Syne4Q8CII8 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Gm8349-201ENSMUST00000182720 1003 ntBASIC18.62■□□□□ 0.57
Syne4Q8CII8 Gm3928-201ENSMUST00000121141 1307 ntBASIC18.62■□□□□ 0.57
Syne4Q8CII8 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Syne4Q8CII8 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Syne4Q8CII8 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Syne4Q8CII8 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Syne4Q8CII8 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Syne4Q8CII8 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC18.61■□□□□ 0.57
Syne4Q8CII8 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Syne4Q8CII8 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Syne4Q8CII8 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC18.61■□□□□ 0.57
Syne4Q8CII8 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Syne4Q8CII8 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC18.61■□□□□ 0.57
Syne4Q8CII8 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.61■□□□□ 0.57
Syne4Q8CII8 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC18.61■□□□□ 0.57
Syne4Q8CII8 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Syne4Q8CII8 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Syne4Q8CII8 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Syne4Q8CII8 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms