Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Gm9889-202ENSMUST00000206983 1577 ntBASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Slc35b2-202ENSMUST00000223987 1766 ntBASIC21.31■■□□□ 1
Rab11fip3Q8CHD8 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
Rab11fip3Q8CHD8 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rab11fip3Q8CHD8 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
Rab11fip3Q8CHD8 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC21.3■■□□□ 1
Rab11fip3Q8CHD8 AC121598.2-201ENSMUST00000228376 2325 ntBASIC21.3■■□□□ 1
Rab11fip3Q8CHD8 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Rab11fip3Q8CHD8 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Rab11fip3Q8CHD8 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rab11fip3Q8CHD8 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Gm5864-201ENSMUST00000202263 970 ntBASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Gm32996-201ENSMUST00000199828 1447 ntBASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC21.29■■□□□ 1
Rab11fip3Q8CHD8 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Gm1818-201ENSMUST00000169406 1184 ntBASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Gm13830-205ENSMUST00000201195 1155 ntBASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Mzt1-203ENSMUST00000227948 952 ntBASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Rab11fip3Q8CHD8 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Gm27867-201ENSMUST00000184778 125 ntBASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 AC127349.1-201ENSMUST00000224590 266 ntBASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Gm19439-201ENSMUST00000198195 2273 ntBASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC21.27■■□□□ 1
Rab11fip3Q8CHD8 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Rab11fip3Q8CHD8 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Rab11fip3Q8CHD8 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Rps4l-201ENSMUST00000071745 943 ntBASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Gm11841-201ENSMUST00000117060 1963 ntBASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rab11fip3Q8CHD8 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms