Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Mir770-201ENSMUST00000103252 94 ntBASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Brf1Q8CFK2 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Gm8258-201ENSMUST00000055593 1449 ntBASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Gm43548-201ENSMUST00000197139 2353 ntBASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Brf1Q8CFK2 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Gm26917-202ENSMUST00000192833 3329 ntBASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Gm9013-201ENSMUST00000132939 882 ntBASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Gm6345-202ENSMUST00000180900 204 ntBASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Gm5587-201ENSMUST00000206270 674 ntBASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Brf1Q8CFK2 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Brf1Q8CFK2 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Brf1Q8CFK2 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms