Protein–RNA interactions for Protein: Q8CDN8

Ccdc38, Coiled-coil domain-containing protein 38, mousemouse

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38Q8CDN8 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc38Q8CDN8 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc38Q8CDN8 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Ccdc38Q8CDN8 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc38Q8CDN8 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc38Q8CDN8 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc38Q8CDN8 Gm37055-201ENSMUST00000191866 133 ntBASIC18.33■□□□□ 0.52
Ccdc38Q8CDN8 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc38Q8CDN8 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
Ccdc38Q8CDN8 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ccdc38Q8CDN8 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Ccdc38Q8CDN8 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Ccdc38Q8CDN8 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 AL672049.1-201ENSMUST00000197943 91 ntBASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Gm18115-201ENSMUST00000221209 621 ntBASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ccdc38Q8CDN8 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ccdc38Q8CDN8 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Gm13436-201ENSMUST00000120418 567 ntBASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Gm16061-201ENSMUST00000122167 857 ntBASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Gm2274-201ENSMUST00000184539 609 ntBASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Gm29994-201ENSMUST00000195495 1193 ntBASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Wnt10b-206ENSMUST00000228546 2709 ntBASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ccdc38Q8CDN8 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Gm44450-201ENSMUST00000199528 114 ntBASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC18.29■□□□□ 0.52
Ccdc38Q8CDN8 AC115863.1-201ENSMUST00000214815 1813 ntBASIC18.28■□□□□ 0.52
Ccdc38Q8CDN8 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms