Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp47Q8BY87 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp47Q8BY87 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp47Q8BY87 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC23.23■■□□□ 1.31
Usp47Q8BY87 Gm8349-201ENSMUST00000182720 1003 ntBASIC23.23■■□□□ 1.31
Usp47Q8BY87 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC23.23■■□□□ 1.31
Usp47Q8BY87 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp47Q8BY87 AC114585.2-202ENSMUST00000228094 426 ntBASIC23.23■■□□□ 1.31
Usp47Q8BY87 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp47Q8BY87 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Usp47Q8BY87 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp47Q8BY87 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp47Q8BY87 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Usp47Q8BY87 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Usp47Q8BY87 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Usp47Q8BY87 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Usp47Q8BY87 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC23.22■■□□□ 1.31
Usp47Q8BY87 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC23.22■■□□□ 1.31
Usp47Q8BY87 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
Usp47Q8BY87 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC23.22■■□□□ 1.31
Usp47Q8BY87 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Usp47Q8BY87 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC23.22■■□□□ 1.31
Usp47Q8BY87 AC108846.1-201ENSMUST00000214531 513 ntBASIC23.22■■□□□ 1.31
Usp47Q8BY87 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC23.22■■□□□ 1.31
Usp47Q8BY87 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC23.22■■□□□ 1.31
Usp47Q8BY87 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
Usp47Q8BY87 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp47Q8BY87 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp47Q8BY87 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp47Q8BY87 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp47Q8BY87 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC23.21■■□□□ 1.31
Usp47Q8BY87 Cmtm5-203ENSMUST00000227441 610 ntBASIC23.21■■□□□ 1.31
Usp47Q8BY87 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC23.21■■□□□ 1.31
Usp47Q8BY87 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Usp47Q8BY87 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
Usp47Q8BY87 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC23.2■■□□□ 1.31
Usp47Q8BY87 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp47Q8BY87 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp47Q8BY87 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp47Q8BY87 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
Usp47Q8BY87 Gm12644-201ENSMUST00000119935 606 ntBASIC23.2■■□□□ 1.3
Usp47Q8BY87 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
Usp47Q8BY87 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp47Q8BY87 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC23.2■■□□□ 1.3
Usp47Q8BY87 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp47Q8BY87 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp47Q8BY87 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
Usp47Q8BY87 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp47Q8BY87 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp47Q8BY87 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC23.18■■□□□ 1.3
Usp47Q8BY87 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
Usp47Q8BY87 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp47Q8BY87 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC23.18■■□□□ 1.3
Usp47Q8BY87 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Usp47Q8BY87 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp47Q8BY87 Gm45774-201ENSMUST00000211992 2665 ntBASIC23.18■■□□□ 1.3
Usp47Q8BY87 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC23.18■■□□□ 1.3
Usp47Q8BY87 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Usp47Q8BY87 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp47Q8BY87 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Usp47Q8BY87 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp47Q8BY87 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp47Q8BY87 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Usp47Q8BY87 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Usp47Q8BY87 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Usp47Q8BY87 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Usp47Q8BY87 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Usp47Q8BY87 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Usp47Q8BY87 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Usp47Q8BY87 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Usp47Q8BY87 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Usp47Q8BY87 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Usp47Q8BY87 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC23.17■■□□□ 1.3
Usp47Q8BY87 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Usp47Q8BY87 AC132265.1-201ENSMUST00000219233 1665 ntBASIC23.17■■□□□ 1.3
Usp47Q8BY87 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Gm43347-201ENSMUST00000200226 580 ntBASIC23.16■■□□□ 1.3
Usp47Q8BY87 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms