Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Gm9694-201ENSMUST00000193347 1189 ntBASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sh3rf1Q69ZI1 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Sh3rf1Q69ZI1 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Sh3rf1Q69ZI1 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Gm38027-201ENSMUST00000192315 235 ntBASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Sh3rf1Q69ZI1 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Sh3rf1Q69ZI1 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Sh3rf1Q69ZI1 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms