Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clcn1Q64347 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clcn1Q64347 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clcn1Q64347 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clcn1Q64347 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Clcn1Q64347 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clcn1Q64347 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clcn1Q64347 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clcn1Q64347 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Clcn1Q64347 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Clcn1Q64347 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Clcn1Q64347 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clcn1Q64347 Gm18856-201ENSMUST00000178096 1374 ntBASIC20.81■□□□□ 0.92
Clcn1Q64347 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Clcn1Q64347 Gm37519-201ENSMUST00000191687 2210 ntBASIC20.81■□□□□ 0.92
Clcn1Q64347 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Clcn1Q64347 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC20.8■□□□□ 0.92
Clcn1Q64347 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
Clcn1Q64347 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC20.8■□□□□ 0.92
Clcn1Q64347 Gm37935-201ENSMUST00000192012 982 ntBASIC20.8■□□□□ 0.92
Clcn1Q64347 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC20.8■□□□□ 0.92
Clcn1Q64347 Gm13830-205ENSMUST00000201195 1155 ntBASIC20.8■□□□□ 0.92
Clcn1Q64347 Gm10060-201ENSMUST00000212002 111 ntBASIC20.8■□□□□ 0.92
Clcn1Q64347 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC20.8■□□□□ 0.92
Clcn1Q64347 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clcn1Q64347 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Clcn1Q64347 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC20.79■□□□□ 0.92
Clcn1Q64347 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Clcn1Q64347 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clcn1Q64347 Gm43332-201ENSMUST00000202511 1044 ntBASIC20.79■□□□□ 0.92
Clcn1Q64347 Gm7506-201ENSMUST00000207758 815 ntBASIC20.79■□□□□ 0.92
Clcn1Q64347 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clcn1Q64347 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clcn1Q64347 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
Clcn1Q64347 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clcn1Q64347 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clcn1Q64347 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clcn1Q64347 Gm28265-201ENSMUST00000188201 2319 ntBASIC20.78■□□□□ 0.92
Clcn1Q64347 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clcn1Q64347 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clcn1Q64347 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clcn1Q64347 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Clcn1Q64347 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clcn1Q64347 Slc35b2-202ENSMUST00000223987 1766 ntBASIC20.78■□□□□ 0.92
Clcn1Q64347 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Clcn1Q64347 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clcn1Q64347 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC20.78■□□□□ 0.92
Clcn1Q64347 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC20.78■□□□□ 0.92
Clcn1Q64347 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Clcn1Q64347 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clcn1Q64347 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Clcn1Q64347 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clcn1Q64347 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Clcn1Q64347 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clcn1Q64347 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC20.77■□□□□ 0.92
Clcn1Q64347 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
Clcn1Q64347 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Gm25745-201ENSMUST00000174945 133 ntBASIC20.77■□□□□ 0.92
Clcn1Q64347 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC20.77■□□□□ 0.92
Clcn1Q64347 Gm5364-201ENSMUST00000216789 889 ntBASIC20.77■□□□□ 0.92
Clcn1Q64347 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Clcn1Q64347 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Clcn1Q64347 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Clcn1Q64347 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clcn1Q64347 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
Clcn1Q64347 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Clcn1Q64347 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Clcn1Q64347 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
Clcn1Q64347 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clcn1Q64347 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clcn1Q64347 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clcn1Q64347 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms