Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc88aQ5SNZ0 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Ccdc88aQ5SNZ0 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Ccdc88aQ5SNZ0 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc88aQ5SNZ0 Auts2-212ENSMUST00000178555 309 ntBASIC18.89■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc88aQ5SNZ0 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.89■□□□□ 0.61
Ccdc88aQ5SNZ0 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc88aQ5SNZ0 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc88aQ5SNZ0 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm10576-201ENSMUST00000191927 825 ntBASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm14494-201ENSMUST00000118786 435 ntBASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm8839-201ENSMUST00000121279 1645 ntBASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc88aQ5SNZ0 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC18.87■□□□□ 0.61
Ccdc88aQ5SNZ0 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Bloc1s5-203ENSMUST00000224902 612 ntBASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm7230-201ENSMUST00000173026 815 ntBASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ccdc88aQ5SNZ0 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms