Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Gm8344-201ENSMUST00000119813 856 ntBASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Best4-ps-201ENSMUST00000129783 1380 ntBASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Hist1h2al-201ENSMUST00000091708 339 ntBASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Col27a1Q5QNQ9 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Gm43767-201ENSMUST00000198933 381 ntBASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col27a1Q5QNQ9 Gm13365-201ENSMUST00000121188 973 ntBASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC15.84■□□□□ 0.13
Col27a1Q5QNQ9 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col27a1Q5QNQ9 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col27a1Q5QNQ9 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
Col27a1Q5QNQ9 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 AC093926.2-201ENSMUST00000214468 1228 ntBASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Gm18622-201ENSMUST00000219361 595 ntBASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 AC107711.5-202ENSMUST00000226429 702 ntBASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Gm5828-201ENSMUST00000071842 1860 ntBASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 AC132265.1-201ENSMUST00000219233 1665 ntBASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col27a1Q5QNQ9 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col27a1Q5QNQ9 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col27a1Q5QNQ9 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col27a1Q5QNQ9 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC15.82■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms