Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Gm13216-201ENSMUST00000117145 591 ntBASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Gm5587-201ENSMUST00000206270 674 ntBASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Upf3bQ3ULL6 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
Upf3bQ3ULL6 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 AA414768-201ENSMUST00000121924 1257 ntBASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Gm25016-201ENSMUST00000158399 131 ntBASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Gm6728-201ENSMUST00000178117 1065 ntBASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Upf3bQ3ULL6 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Gm45412-201ENSMUST00000210217 2275 ntBASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Upf3bQ3ULL6 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms