Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Gm45412-201ENSMUST00000210217 2275 ntBASIC19.41■□□□□ 0.7
Limch1Q3UH68 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Gm9013-201ENSMUST00000132939 882 ntBASIC19.4■□□□□ 0.7
Limch1Q3UH68 Gm27704-201ENSMUST00000185094 107 ntBASIC19.4■□□□□ 0.7
Limch1Q3UH68 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Limch1Q3UH68 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Gm20628-201ENSMUST00000177363 3215 ntBASIC19.39■□□□□ 0.69
Limch1Q3UH68 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.39■□□□□ 0.69
Limch1Q3UH68 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Limch1Q3UH68 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC19.38■□□□□ 0.69
Limch1Q3UH68 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Limch1Q3UH68 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Limch1Q3UH68 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Limch1Q3UH68 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Limch1Q3UH68 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Limch1Q3UH68 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Limch1Q3UH68 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Limch1Q3UH68 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Limch1Q3UH68 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Limch1Q3UH68 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Limch1Q3UH68 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Limch1Q3UH68 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Limch1Q3UH68 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC19.36■□□□□ 0.69
Limch1Q3UH68 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Gm7213-201ENSMUST00000215977 950 ntBASIC19.36■□□□□ 0.69
Limch1Q3UH68 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms