Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Rnf180Q3U827 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Mir7684-201ENSMUST00000183858 60 ntBASIC19.37■□□□□ 0.69
Rnf180Q3U827 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Gm6007-201ENSMUST00000208170 823 ntBASIC19.37■□□□□ 0.69
Rnf180Q3U827 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC19.37■□□□□ 0.69
Rnf180Q3U827 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Golph3-205ENSMUST00000228671 2842 ntBASIC19.36■□□□□ 0.69
Rnf180Q3U827 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.36■□□□□ 0.69
Rnf180Q3U827 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Gm27989-201ENSMUST00000184721 107 ntBASIC19.35■□□□□ 0.69
Rnf180Q3U827 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Gm7730-201ENSMUST00000212486 454 ntBASIC19.35■□□□□ 0.69
Rnf180Q3U827 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 CT025626.1-201ENSMUST00000223735 1455 ntBASIC19.35■□□□□ 0.69
Rnf180Q3U827 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf180Q3U827 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf180Q3U827 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Rnf180Q3U827 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
Rnf180Q3U827 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Rnf180Q3U827 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Rnf180Q3U827 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Rnf180Q3U827 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Rnf180Q3U827 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf180Q3U827 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf180Q3U827 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC19.33■□□□□ 0.68
Rnf180Q3U827 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf180Q3U827 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf180Q3U827 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Rnf180Q3U827 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf180Q3U827 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Rnf180Q3U827 Best4-ps-201ENSMUST00000129783 1380 ntBASIC19.32■□□□□ 0.68
Rnf180Q3U827 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf180Q3U827 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf180Q3U827 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf180Q3U827 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.32■□□□□ 0.68
Rnf180Q3U827 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf180Q3U827 Gm13223-201ENSMUST00000118609 747 ntBASIC19.32■□□□□ 0.68
Rnf180Q3U827 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC19.32■□□□□ 0.68
Rnf180Q3U827 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf180Q3U827 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms