Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddb1Q3U1J4 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
Ddb1Q3U1J4 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
Ddb1Q3U1J4 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
Ddb1Q3U1J4 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ddb1Q3U1J4 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ddb1Q3U1J4 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ddb1Q3U1J4 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ddb1Q3U1J4 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
Ddb1Q3U1J4 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddb1Q3U1J4 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Ddb1Q3U1J4 Gm5682-201ENSMUST00000173402 505 ntBASIC20.89■□□□□ 0.93
Ddb1Q3U1J4 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
Ddb1Q3U1J4 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Ddb1Q3U1J4 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddb1Q3U1J4 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddb1Q3U1J4 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddb1Q3U1J4 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Ddb1Q3U1J4 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC20.89■□□□□ 0.93
Ddb1Q3U1J4 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddb1Q3U1J4 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 Gm27646-201ENSMUST00000183989 110 ntBASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddb1Q3U1J4 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 AC131709.1-201ENSMUST00000224731 1180 ntBASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddb1Q3U1J4 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Gm17271-201ENSMUST00000165535 355 ntBASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 AC107711.5-202ENSMUST00000226429 702 ntBASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Gm8396-201ENSMUST00000057361 823 ntBASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ddb1Q3U1J4 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms