Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Rfx3P48381 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Rfx3P48381 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Rfx3P48381 Gm715-201ENSMUST00000117865 831 ntBASIC14.92□□□□□ -0.02
Rfx3P48381 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC14.92□□□□□ -0.02
Rfx3P48381 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC14.92□□□□□ -0.02
Rfx3P48381 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Rfx3P48381 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Rfx3P48381 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Rfx3P48381 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Rfx3P48381 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Rfx3P48381 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Rfx3P48381 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
Rfx3P48381 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Rfx3P48381 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Rfx3P48381 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Rfx3P48381 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Rfx3P48381 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Rfx3P48381 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Rfx3P48381 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC14.91□□□□□ -0.02
Rfx3P48381 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC14.91□□□□□ -0.02
Rfx3P48381 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC14.91□□□□□ -0.02
Rfx3P48381 Gm10252-201ENSMUST00000209541 832 ntBASIC14.91□□□□□ -0.02
Rfx3P48381 AC120002.2-201ENSMUST00000220205 773 ntBASIC14.91□□□□□ -0.02
Rfx3P48381 Odf3b-204ENSMUST00000227834 930 ntBASIC14.91□□□□□ -0.02
Rfx3P48381 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Rfx3P48381 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC14.9□□□□□ -0.02
Rfx3P48381 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC14.9□□□□□ -0.02
Rfx3P48381 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Rfx3P48381 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Gm13181-201ENSMUST00000120117 1069 ntBASIC14.9□□□□□ -0.02
Rfx3P48381 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
Rfx3P48381 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC14.9□□□□□ -0.02
Rfx3P48381 Il3ra-202ENSMUST00000223589 738 ntBASIC14.9□□□□□ -0.02
Rfx3P48381 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Rfx3P48381 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC14.9□□□□□ -0.02
Rfx3P48381 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Rfx3P48381 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Rfx3P48381 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Rfx3P48381 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC14.89□□□□□ -0.03
Rfx3P48381 Otx2os1-204ENSMUST00000227221 751 ntBASIC14.89□□□□□ -0.03
Rfx3P48381 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Rfx3P48381 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Rfx3P48381 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx3P48381 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Rfx3P48381 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms