Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC19.25■□□□□ 0.67
Col1a1P11087 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Col1a1P11087 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC19.25■□□□□ 0.67
Col1a1P11087 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC19.25■□□□□ 0.67
Col1a1P11087 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col1a1P11087 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.25■□□□□ 0.67
Col1a1P11087 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col1a1P11087 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col1a1P11087 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col1a1P11087 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col1a1P11087 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col1a1P11087 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.24■□□□□ 0.67
Col1a1P11087 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col1a1P11087 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC19.24■□□□□ 0.67
Col1a1P11087 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC19.24■□□□□ 0.67
Col1a1P11087 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC19.24■□□□□ 0.67
Col1a1P11087 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC19.24■□□□□ 0.67
Col1a1P11087 Gm5253-201ENSMUST00000187104 1025 ntBASIC19.24■□□□□ 0.67
Col1a1P11087 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC19.24■□□□□ 0.67
Col1a1P11087 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
Col1a1P11087 Chchd1-203ENSMUST00000224633 557 ntBASIC19.24■□□□□ 0.67
Col1a1P11087 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col1a1P11087 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC19.23■□□□□ 0.67
Col1a1P11087 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC19.23■□□□□ 0.67
Col1a1P11087 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC19.23■□□□□ 0.67
Col1a1P11087 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC19.23■□□□□ 0.67
Col1a1P11087 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Col1a1P11087 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC19.23■□□□□ 0.67
Col1a1P11087 AC174742.1-201ENSMUST00000218272 304 ntBASIC19.23■□□□□ 0.67
Col1a1P11087 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC19.23■□□□□ 0.67
Col1a1P11087 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC19.23■□□□□ 0.67
Col1a1P11087 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
Col1a1P11087 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col1a1P11087 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Col1a1P11087 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Gm4913-201ENSMUST00000117075 1290 ntBASIC19.22■□□□□ 0.67
Col1a1P11087 Gm15920-201ENSMUST00000118998 402 ntBASIC19.22■□□□□ 0.67
Col1a1P11087 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC19.22■□□□□ 0.67
Col1a1P11087 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC19.22■□□□□ 0.67
Col1a1P11087 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.22■□□□□ 0.67
Col1a1P11087 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Col1a1P11087 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Col1a1P11087 Mir6404-201ENSMUST00000183699 94 ntBASIC19.22■□□□□ 0.67
Col1a1P11087 Gm27646-201ENSMUST00000183989 110 ntBASIC19.22■□□□□ 0.67
Col1a1P11087 Bloc1s5-203ENSMUST00000224902 612 ntBASIC19.22■□□□□ 0.67
Col1a1P11087 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC19.22■□□□□ 0.67
Col1a1P11087 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col1a1P11087 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Col1a1P11087 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
Col1a1P11087 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC19.21■□□□□ 0.67
Col1a1P11087 Gm5682-201ENSMUST00000173402 505 ntBASIC19.21■□□□□ 0.67
Col1a1P11087 AC159106.1-201ENSMUST00000224421 690 ntBASIC19.21■□□□□ 0.67
Col1a1P11087 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col1a1P11087 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Col1a1P11087 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col1a1P11087 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col1a1P11087 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col1a1P11087 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col1a1P11087 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Col1a1P11087 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col1a1P11087 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col1a1P11087 H2af-ps-201ENSMUST00000119066 295 ntBASIC19.2■□□□□ 0.66
Col1a1P11087 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Col1a1P11087 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms