Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Col3a1P08121 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col3a1P08121 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC19.62■□□□□ 0.73
Col3a1P08121 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col3a1P08121 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col3a1P08121 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Col3a1P08121 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col3a1P08121 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Col3a1P08121 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col3a1P08121 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col3a1P08121 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Col3a1P08121 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 Gm18856-201ENSMUST00000178096 1374 ntBASIC19.61■□□□□ 0.73
Col3a1P08121 Gm5837-201ENSMUST00000191844 1369 ntBASIC19.61■□□□□ 0.73
Col3a1P08121 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC19.61■□□□□ 0.73
Col3a1P08121 Gm37584-201ENSMUST00000193595 1290 ntBASIC19.61■□□□□ 0.73
Col3a1P08121 Gm18206-201ENSMUST00000207027 926 ntBASIC19.61■□□□□ 0.73
Col3a1P08121 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC19.61■□□□□ 0.73
Col3a1P08121 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC19.61■□□□□ 0.73
Col3a1P08121 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col3a1P08121 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col3a1P08121 Gm11780-201ENSMUST00000136880 516 ntBASIC19.6■□□□□ 0.73
Col3a1P08121 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col3a1P08121 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC19.6■□□□□ 0.73
Col3a1P08121 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC19.6■□□□□ 0.73
Col3a1P08121 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col3a1P08121 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Col3a1P08121 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col3a1P08121 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col3a1P08121 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col3a1P08121 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col3a1P08121 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col3a1P08121 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC19.6■□□□□ 0.73
Col3a1P08121 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col3a1P08121 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC19.6■□□□□ 0.73
Col3a1P08121 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC19.6■□□□□ 0.73
Col3a1P08121 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC19.6■□□□□ 0.73
Col3a1P08121 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col3a1P08121 AC132104.2-201ENSMUST00000215011 266 ntBASIC19.6■□□□□ 0.73
Col3a1P08121 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col3a1P08121 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col3a1P08121 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC19.59■□□□□ 0.73
Col3a1P08121 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col3a1P08121 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC19.59■□□□□ 0.73
Col3a1P08121 Gm27525-201ENSMUST00000184465 107 ntBASIC19.59■□□□□ 0.73
Col3a1P08121 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col3a1P08121 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col3a1P08121 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.58■□□□□ 0.73
Col3a1P08121 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col3a1P08121 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Col3a1P08121 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col3a1P08121 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Col3a1P08121 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Col3a1P08121 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC19.58■□□□□ 0.72
Col3a1P08121 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col3a1P08121 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC19.58■□□□□ 0.72
Col3a1P08121 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col3a1P08121 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col3a1P08121 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col3a1P08121 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col3a1P08121 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Col3a1P08121 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Col3a1P08121 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC19.57■□□□□ 0.72
Col3a1P08121 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Col3a1P08121 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col3a1P08121 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.56■□□□□ 0.72
Col3a1P08121 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Col3a1P08121 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col3a1P08121 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col3a1P08121 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col3a1P08121 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col3a1P08121 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col3a1P08121 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC19.56■□□□□ 0.72
Col3a1P08121 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC19.56■□□□□ 0.72
Col3a1P08121 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC19.56■□□□□ 0.72
Col3a1P08121 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms