Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC15.28■□□□□ 0.04
Cops4O88544 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Cops4O88544 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC15.28■□□□□ 0.04
Cops4O88544 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Cops4O88544 Alkbh1-212ENSMUST00000185301 408 ntBASIC15.28■□□□□ 0.04
Cops4O88544 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC15.28■□□□□ 0.04
Cops4O88544 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Gm10654-201ENSMUST00000098653 1633 ntBASIC15.28■□□□□ 0.04
Cops4O88544 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
Cops4O88544 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops4O88544 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops4O88544 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Cops4O88544 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops4O88544 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops4O88544 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops4O88544 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops4O88544 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops4O88544 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC15.27■□□□□ 0.04
Cops4O88544 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops4O88544 Gm11249-201ENSMUST00000117071 859 ntBASIC15.27■□□□□ 0.04
Cops4O88544 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC15.27■□□□□ 0.04
Cops4O88544 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC15.27■□□□□ 0.04
Cops4O88544 Slc35b2-207ENSMUST00000226086 850 ntBASIC15.27■□□□□ 0.04
Cops4O88544 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cops4O88544 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC15.27■□□□□ 0.03
Cops4O88544 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Cops4O88544 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cops4O88544 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.03
Cops4O88544 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cops4O88544 AL590614.2-201ENSMUST00000225374 1937 ntBASIC15.27■□□□□ 0.03
Cops4O88544 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Cops4O88544 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cops4O88544 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cops4O88544 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Cops4O88544 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cops4O88544 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Cops4O88544 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops4O88544 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Cops4O88544 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops4O88544 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cops4O88544 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC15.26■□□□□ 0.03
Cops4O88544 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops4O88544 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops4O88544 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC15.26■□□□□ 0.03
Cops4O88544 AC163280.1-201ENSMUST00000228194 1100 ntBASIC15.26■□□□□ 0.03
Cops4O88544 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops4O88544 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops4O88544 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cops4O88544 Gm45560-201ENSMUST00000211492 1472 ntBASIC15.26■□□□□ 0.03
Cops4O88544 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops4O88544 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops4O88544 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Cops4O88544 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC15.26■□□□□ 0.03
Cops4O88544 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Cops4O88544 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Cops4O88544 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Cops4O88544 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC15.25■□□□□ 0.03
Cops4O88544 Gm13158-201ENSMUST00000122007 736 ntBASIC15.25■□□□□ 0.03
Cops4O88544 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC15.25■□□□□ 0.03
Cops4O88544 Gm6576-201ENSMUST00000169678 883 ntBASIC15.25■□□□□ 0.03
Cops4O88544 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Cops4O88544 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 AC153526.5-201ENSMUST00000218661 2147 ntBASIC15.25■□□□□ 0.03
Cops4O88544 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cops4O88544 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Cops4O88544 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cops4O88544 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cops4O88544 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
Cops4O88544 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cops4O88544 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cops4O88544 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cops4O88544 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cops4O88544 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cops4O88544 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cops4O88544 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Cops4O88544 Gm27275-201ENSMUST00000184318 272 ntBASIC15.24■□□□□ 0.03
Cops4O88544 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cops4O88544 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cops4O88544 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms