Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prom1O54990 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Prom1O54990 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prom1O54990 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prom1O54990 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prom1O54990 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC18.15■□□□□ 0.5
Prom1O54990 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prom1O54990 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prom1O54990 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prom1O54990 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Prom1O54990 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Prom1O54990 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prom1O54990 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.14■□□□□ 0.49
Prom1O54990 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prom1O54990 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC18.14■□□□□ 0.49
Prom1O54990 Gm15173-201ENSMUST00000122049 433 ntBASIC18.14■□□□□ 0.49
Prom1O54990 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC18.14■□□□□ 0.49
Prom1O54990 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Prom1O54990 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Prom1O54990 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC18.14■□□□□ 0.49
Prom1O54990 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC18.14■□□□□ 0.49
Prom1O54990 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prom1O54990 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prom1O54990 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC18.14■□□□□ 0.49
Prom1O54990 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC18.14■□□□□ 0.49
Prom1O54990 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Prom1O54990 Gm37811-201ENSMUST00000192416 2601 ntBASIC18.14■□□□□ 0.49
Prom1O54990 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Prom1O54990 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prom1O54990 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prom1O54990 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prom1O54990 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prom1O54990 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prom1O54990 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prom1O54990 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prom1O54990 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.13■□□□□ 0.49
Prom1O54990 Gm25990-201ENSMUST00000102440 86 ntBASIC18.13■□□□□ 0.49
Prom1O54990 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Prom1O54990 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Prom1O54990 Mir5126-201ENSMUST00000175513 77 ntBASIC18.13■□□□□ 0.49
Prom1O54990 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC18.13■□□□□ 0.49
Prom1O54990 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prom1O54990 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Prom1O54990 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Prom1O54990 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Prom1O54990 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Prom1O54990 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.12■□□□□ 0.49
Prom1O54990 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Prom1O54990 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC18.12■□□□□ 0.49
Prom1O54990 Gm37935-201ENSMUST00000192012 982 ntBASIC18.12■□□□□ 0.49
Prom1O54990 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC18.12■□□□□ 0.49
Prom1O54990 Rbfox2-207ENSMUST00000227533 1041 ntBASIC18.12■□□□□ 0.49
Prom1O54990 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Prom1O54990 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Prom1O54990 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Prom1O54990 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC18.11■□□□□ 0.49
Prom1O54990 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Prom1O54990 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prom1O54990 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prom1O54990 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC18.11■□□□□ 0.49
Prom1O54990 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prom1O54990 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC18.11■□□□□ 0.49
Prom1O54990 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Prom1O54990 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prom1O54990 Gm8349-201ENSMUST00000182720 1003 ntBASIC18.11■□□□□ 0.49
Prom1O54990 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC18.11■□□□□ 0.49
Prom1O54990 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.11■□□□□ 0.49
Prom1O54990 AC114585.2-202ENSMUST00000228094 426 ntBASIC18.11■□□□□ 0.49
Prom1O54990 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prom1O54990 AC154527.4-201ENSMUST00000224364 1667 ntBASIC18.11■□□□□ 0.49
Prom1O54990 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
Prom1O54990 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC18.11■□□□□ 0.49
Prom1O54990 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prom1O54990 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prom1O54990 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prom1O54990 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Prom1O54990 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prom1O54990 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prom1O54990 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prom1O54990 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Prom1O54990 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Prom1O54990 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms