Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Hmgb3O54879 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Hmgb3O54879 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Hmgb3O54879 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Hmgb3O54879 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC13.73□□□□□ -0.21
Hmgb3O54879 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC13.73□□□□□ -0.21
Hmgb3O54879 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC13.73□□□□□ -0.21
Hmgb3O54879 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Hmgb3O54879 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Hmgb3O54879 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC13.73□□□□□ -0.21
Hmgb3O54879 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Hmgb3O54879 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC13.72□□□□□ -0.21
Hmgb3O54879 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Hmgb3O54879 Gm5421-201ENSMUST00000181698 2354 ntBASIC13.72□□□□□ -0.21
Hmgb3O54879 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC13.72□□□□□ -0.21
Hmgb3O54879 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC13.72□□□□□ -0.21
Hmgb3O54879 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Hmgb3O54879 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Hmgb3O54879 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Hmgb3O54879 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Hmgb3O54879 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Tfap2a-209ENSMUST00000225180 1828 ntBASIC13.71□□□□□ -0.21
Hmgb3O54879 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC13.71□□□□□ -0.21
Hmgb3O54879 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Hmgb3O54879 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Gm2399-201ENSMUST00000104944 225 ntBASIC13.71□□□□□ -0.21
Hmgb3O54879 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC13.71□□□□□ -0.21
Hmgb3O54879 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC13.71□□□□□ -0.21
Hmgb3O54879 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.21
Hmgb3O54879 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
Hmgb3O54879 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Hmgb3O54879 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Hmgb3O54879 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Hmgb3O54879 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Hmgb3O54879 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Hmgb3O54879 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Hmgb3O54879 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Hmgb3O54879 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Hmgb3O54879 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Hmgb3O54879 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Hmgb3O54879 Gm19721-201ENSMUST00000195284 1764 ntBASIC13.71□□□□□ -0.22
Hmgb3O54879 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Hmgb3O54879 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Hmgb3O54879 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms