Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CEACAMP9-201ENST00000442990 513 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 RPL7P59-201ENST00000447700 943 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 RPL12P26-201ENST00000452430 487 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AC097262.1-201ENST00000452559 548 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC5.31□□□□□ -1.56
SMARCA1P28370 MTND2P28-201ENST00000457540 1044 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 PNPLA4P1-201ENST00000458328 305 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 RPL31P3-201ENST00000458430 332 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
SMARCA1P28370 AL591473.1-201ENST00000464297 313 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 OR52A4P-201ENST00000472867 958 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.31□□□□□ -1.56
SMARCA1P28370 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC5.31□□□□□ -1.56
SMARCA1P28370 RPL23AP72-201ENST00000492447 435 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AC008897.1-201ENST00000494006 347 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC5.31□□□□□ -1.56
SMARCA1P28370 TCP11X3P-202ENST00000514289 1254 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AC008494.2-201ENST00000514544 370 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 RNA5SP360-201ENST00000516555 118 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 RNA5SP135-201ENST00000517019 125 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 RN7SKP92-201ENST00000517266 244 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SMARCA1P28370 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.31□□□□□ -1.56
SMARCA1P28370 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC5.31□□□□□ -1.56
SMARCA1P28370 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC5.31□□□□□ -1.56
SMARCA1P28370 UBE2NP1-201ENST00000545592 458 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.31□□□□□ -1.56
SMARCA1P28370 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC5.31□□□□□ -1.56
SMARCA1P28370 AC069061.3-201ENST00000582254 823 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AC115286.1-201ENST00000604298 434 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC5.31□□□□□ -1.56
SMARCA1P28370 AC009704.2-201ENST00000618739 483 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AL607023.1-201ENST00000620045 248 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SMARCA1P28370 AC091931.1-201ENST00000623488 728 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SMARCA1P28370 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.31□□□□□ -1.56
SMARCA1P28370 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.31□□□□□ -1.56
SMARCA1P28370 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.31□□□□□ -1.56
SMARCA1P28370 MAPK6PS3-201ENST00000403865 2162 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AL391684.1-202ENST00000641293 1636 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
SMARCA1P28370 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 TAF9BP1-201ENST00000396646 746 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 LUZP4P1-201ENST00000415420 344 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 RPL26P29-201ENST00000415623 438 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 UQCRBP1-201ENST00000421129 336 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 RAD23BP1-201ENST00000421404 1227 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.3□□□□□ -1.56
SMARCA1P28370 ELOCP8-201ENST00000439309 332 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 ELOCP15-201ENST00000442090 332 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 EEF1A1P1-201ENST00000447052 739 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.3□□□□□ -1.56
SMARCA1P28370 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.3□□□□□ -1.56
SMARCA1P28370 AC092754.2-201ENST00000463506 460 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 ACTG1P13-201ENST00000486987 1043 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.3□□□□□ -1.56
SMARCA1P28370 AC147055.4-201ENST00000504399 745 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC5.3□□□□□ -1.56
SMARCA1P28370 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.3□□□□□ -1.56
SMARCA1P28370 RNU6-885P-201ENST00000516607 104 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC5.3□□□□□ -1.56
SMARCA1P28370 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC5.3□□□□□ -1.56
SMARCA1P28370 NAP1L1P1-201ENST00000524793 1063 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.3□□□□□ -1.56
SMARCA1P28370 GTF2IP8-201ENST00000560687 584 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC5.3□□□□□ -1.56
SMARCA1P28370 AC084783.1-201ENST00000565846 910 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 AC005951.1-201ENST00000576706 485 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 MIR4330-201ENST00000579077 105 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.3□□□□□ -1.56
SMARCA1P28370 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC5.3□□□□□ -1.56
SMARCA1P28370 CLPTM1LP1-201ENST00000604519 484 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 AC097505.1-201ENST00000610199 565 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 MIR6748-201ENST00000610433 71 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 uc_338.18-201ENST00000615451 175 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SMARCA1P28370 AC069209.1-201ENST00000619282 651 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 AP000346.3-201ENST00000622821 210 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 AC073530.2-201ENST00000623987 261 ntBASIC5.3□□□□□ -1.56
SMARCA1P28370 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC5.3□□□□□ -1.56
SMARCA1P28370 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.3□□□□□ -1.56
SMARCA1P28370 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
SMARCA1P28370 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.3□□□□□ -1.56
SMARCA1P28370 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SMARCA1P28370 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SMARCA1P28370 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SMARCA1P28370 AL445523.1-201ENST00000451184 1362 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 137.3 ms