Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC013412.1-201ENST00000610687 192 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 XKRY2-202ENST00000623874 1581 ntBASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 XKRY-202ENST00000624960 1581 ntBASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 SNORA80A-201ENST00000363922 136 ntBASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 GCNT6-201ENST00000379591 934 ntBASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 Z99755.1-201ENST00000414048 380 ntBASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 RPS20P1-201ENST00000434853 354 ntBASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 AL356535.1-201ENST00000440335 398 ntBASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 MRPL35P4-201ENST00000453682 566 ntBASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 RPS6P4-201ENST00000494693 758 ntBASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 AC007656.2-201ENST00000624902 4547 ntBASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC88AQ3V6T2 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 SNORA5B-201ENST00000363786 132 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 SNORA48.8-201ENST00000391324 134 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 GSTA8P-201ENST00000404253 637 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 RNA5SP296-201ENST00000410523 111 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 HMGN1P24-201ENST00000412282 298 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 AC002075.2-201ENST00000425207 252 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 AC099560.2-201ENST00000457554 255 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 IGHV3-29-201ENST00000604817 344 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 SNORA68.2-201ENST00000391263 128 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 RPL27AP5-201ENST00000469428 449 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 AC084357.1-201ENST00000473404 255 ntBASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC88AQ3V6T2 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
CCDC88AQ3V6T2 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.21□□□□□ -1.73
CCDC88AQ3V6T2 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC4.21□□□□□ -1.73
CCDC88AQ3V6T2 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
CCDC88AQ3V6T2 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 AC062016.1-201ENST00000355719 319 ntBASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 RPL35AP12-201ENST00000425362 338 ntBASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 NDUFB1P1-201ENST00000435191 180 ntBASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 AP001992.1-205ENST00000462248 379 ntBASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 AC069499.1-201ENST00000489433 509 ntBASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 AC008489.1-201ENST00000524271 483 ntBASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 AL732618.1-201ENST00000623251 301 ntBASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 LINC02471-203ENST00000641941 4752 ntBASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 ZNF90P1-201ENST00000480493 1951 ntBASIC4.21□□□□□ -1.74
CCDC88AQ3V6T2 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 SNORA44-201ENST00000384584 132 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 RSL24D1P1-201ENST00000404972 493 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 BX890604.2-201ENST00000427883 474 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 AC005229.2-201ENST00000456995 399 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 RPL7P48-201ENST00000461513 746 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms