Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 RPL12P46-201ENST00000436610 195 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 ARL4AP3-201ENST00000441452 574 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC004865.1-201ENST00000442276 1003 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 HSFY6P-201ENST00000445573 403 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AL589765.3-201ENST00000446084 462 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 HMGB1P48-201ENST00000446155 598 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC007327.1-201ENST00000447461 264 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 VPS26AP1-201ENST00000483197 979 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC105137.1-201ENST00000484355 562 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC113430.1-201ENST00000506872 718 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC026726.1-201ENST00000512859 601 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 RNA5SP315-201ENST00000516340 116 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 RNA5SP312-201ENST00000517068 116 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC026407.1-201ENST00000518369 204 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 MTCO2P15-201ENST00000532655 656 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC023813.2-201ENST00000564321 469 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 MIR4716-201ENST00000579628 84 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AP001269.3-201ENST00000588718 329 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC069545.1-201ENST00000605671 358 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AL158163.2-201ENST00000619110 700 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AL023881.1-201ENST00000621088 301 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC011330.2-201ENST00000621680 635 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC124312.6-202ENST00000623624 418 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC097520.1-201ENST00000624435 385 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 SALL4P2-201ENST00000423288 2910 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 OR14L1P-202ENST00000641545 3009 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC007529.1-201ENST00000418574 2178 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AL031119.1-201ENST00000404707 1879 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC093535.2-201ENST00000624769 2326 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 RNU6-1242P-201ENST00000391052 103 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AL357515.1-201ENST00000402967 542 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC011933.1-201ENST00000413334 321 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 TBCAP2-201ENST00000416175 326 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 IPMKP1-201ENST00000425988 855 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC092447.3-201ENST00000426027 686 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC023347.2-201ENST00000433994 462 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 CEACAMP1-201ENST00000434624 1035 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AL450263.2-201ENST00000439400 589 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC079776.3-201ENST00000450665 370 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 ZNF736P8Y-201ENST00000451913 669 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC116533.1-201ENST00000459748 321 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 RPS7P7-201ENST00000463499 571 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC010683.1-201ENST00000473673 378 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 RPL30P11-201ENST00000495304 339 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC048346.1-201ENST00000510247 144 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 RNA5SP392-201ENST00000516905 112 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 RN7SKP96-201ENST00000516948 297 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 RPL23AP53-201ENST00000521854 457 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC107918.3-201ENST00000533272 382 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 SERPINE4P-201ENST00000554978 281 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC022726.1-201ENST00000587475 207 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC073091.2-201ENST00000603205 907 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 MTND3P19-201ENST00000603825 345 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AP003973.1-201ENST00000604639 691 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AC009237.17-201ENST00000618111 748 ntBASIC4.48□□□□□ -1.69
COL28A1Q2UY09 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 AP005019.3-201ENST00000620418 560 ntBASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms